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CASCADE is a global dataset for 139 extant coccolithophore taxonomic units. CASCADE includes a trait database (size and cellular organic and inorganic carbon contents) and taxonomic-specific global spatiotemporal distributions (Lat/Lon/Depth/Month/Year) of coccolithophore abundance and organic and inorganic carbon stocks. CASCADE covers all ocean basins over the upper 275 meters, spans the years 1964-2019 and includes 33,119 taxonomic-specific abundance observations. Within CASCADE, we characterise the underlying uncertainties due to measurement errors by propagating error estimates between the different studies. Full details of the data set are provided in the associated Scientific Data manuscript. The repository contains five main folders: 1) "Classification", which contains YAML files with synonyms, family-level classifications, and life cycle phase associations and definitions; 2) "Concatenated literature", which contains the merged datasets of size, PIC and POC and which were corrected for taxonomic unit synonyms; 3) "Resampled cellular datasets", which contains the resampled datasets of size, PIC and POC in long format as well as a summary table; 4) "Gridded data sets", which contains gridded datasets of abundance, PIC and POC; 5) "Species lists", which contains spreadsheets of the "common" (>20 obs) and "rare" (<20 obs) species and their number of observations. The CASCADE data set can be easily reproduced using the scripts and data provided in the associated github repository: https://github.com/nanophyto/CASCADE/ (zenodo.12797197) Correspondence to: Joost de Vries, joost.devries@bristol.ac.uk v.0.1.2 has some fixes: 1. The wrongly specified S. neapolitana was removed from synonyms.yml (this species is now S. nana)2. Longitudes were corrected for Guerreiro et al., 20233. A double entry for Dimizia et al., 2015 was fixed4. Units in Sal et al., 2013 were correct to cells/L (previously cells/ml)5. Data from Sal et al., 2013 was re-done, as some species were missing6. Duplicate entries from Baumann et al., 2000 were dropped

Supplementary Information is available for this paper.

Patterns of movement of marine species can reflect strategies of reproduction and dispersal, species’ interactions, trophodynamics, and susceptibility to change, and thus critically inform how we manage populations and ecosystems. On coral reefs, the density and diversity of metazoan taxa is greatest in dead coral and rubble, which is suggested to fuel food webs from the bottom-up. Yet, biomass and secondary productivity in rubble is predominantly available in some of the smallest individuals, limiting how accessible this energy is to higher trophic levels. We address the bioavailability of motile coral reef cryptofauna based on small-scale patterns of emigration in rubble. We deployed modified RUbble Biodiversity Samplers (RUBS) and emergence traps in a shallow rubble patch at Heron Island, Great Barrier Reef, to detect community-level differences in the directional influx of motile cryptofauna under five habitat accessibility regimes. The mean density (0.13–4.5 ind.cm-3) and biomass (0.14–5.2 mg.cm-3) of cryptofauna were high and varied depending on microhabitat accessibility. Emergent zooplankton represented a distinct community (dominated by the Appendicularia and Calanoida) with the lowest density and biomass, indicating constraints on nocturnal resource availability. Mean cryptofauna density and biomass were greatest when interstitial access within rubble was blocked, driven by the rapid proliferation of small harpacticoid copepods from the rubble surface, leading to trophic simplification. Individuals with high biomass (e.g., decapods, gobies, and echinoderms) were greatest when interstitial access within rubble was unrestricted. Treatments with a closed rubble surface did not differ from those completely open, suggesting that top-down predation does not diminish rubble-derived resources. Our results show that conspecific cues and species’ interactions (e.g., competition and predation) within rubble are most critical in shaping ecological outcomes within the cryptobiome. These findings have implications for prey accessibility through trophic and community size structuring in rubble, which may become increasingly relevant as benthic reef complexity shifts in the Anthropocene. We address the bioavailability of coral reef cryptofauna in rubble based on small-scale patterns of emigration. We adapted the accessibility of Rubble Biodiversity Samplers (RUBS), models used to standardise biodiversity sampling in rubble (Wolfe and Mumby 2020), to explore the local movement patterns of rubble-dwelling fauna, with inference to predation processes within and beyond the cryptobenthos. Five treatments were developed to detect community-level differences in the directional influx of motile cryptofauna under various habitat accessibility regimes. Four of these treatments were developed by modifying accessibility into RUBS (https://www.thingiverse.com/thing:4176644/files) to understand limitations on the directional influx and movement of cryptofauna within coral rubble patches using four treatments; (1) open (completely accessible), (2) interstitial access (top closed), (3) surficial access (sides and bottom closed), and (4) raised (above rubble substratum). The fifth treatment involved a series of emergence plankton traps, designed to target demersal cryptofauna that vertically migrate from within the rubble benthos at night, given emergent zooplankton biomass and diversity are greatest at night. Fieldwork was conducted over several weeks (11th September to 5th October 2021) in a shallow (~3–5 m depth) reef slope site on the southern margin of Heron Island (-23˚26.845’ S, 151˚54.732’ E), Great Barrier Reef, Australia (Fig. 1). All collections were conducted under the Great Barrier Reef Marine Park Authority permit G20/44613.1.

Poleward range extensions by warm-adapted sea urchins are switching temperate marine ecosystems from kelp-dominated to barren-dominated systems that favour the establishment of range-extending tropical fishes. Yet, such tropicalization may be buffered by ocean acidification, which reduces urchin grazing performance and the urchin barrens that tropical range-extending fishes prefer. Using ecosystems experiencing natural warming and acidification, we show that ocean acidification could buffer warming-facilitated tropicalization by reducing urchin populations (by 87%) and inhibiting the formation of barrens. This buffering effect of CO2 enrichment was observed at natural CO2 vents that are associated with a shift from a barren-dominated to a turf-dominated state, which we found is less favourable to tropical fishes. Together, these observations suggest that ocean acidification may buffer the tropicalization effect of ocean warming against urchin barren formation via multiple processes (fewer urchins and barrens) and consequently slow the increasing rate of tropicalization of temperate fish communities. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-07-26.

Widespread shrub encroachment is profoundly impacting the structures and functions of global drylands, and precipitation change is assumed to be one of the most critical factors affecting this phenomenon. However, there is little evidence to show how precipitation changes will affect the process. In this study, we conducted a 6-year precipitation manipulation experiment (-30%, ambient, +30%, and +50%) to investigate the effects of precipitation changes on the growth of shrubs and herbaceous plants in a shrub-encroached grassland in Inner Mongolia. We found that the increasing precipitation significantly increased the mean height, coverage, and aboveground biomass of herbaceous species, while the growth of shrub species did not exhibit a significant response to precipitation changes. With increasing precipitation, the relative coverage of shrubs decreased, while that of herbs increased. The native dominant herbaceous plant (Leymus chinensis) with more sensitive maximum photosynthetic rate to the precipitation change, showed higher photosynthetic nitrogen use efficiency and water use efficiency than those of the encroached shrub species (Caragana microphylla) at high soil moisture contents, reflecting that the ecophysiological characteristics of L. chinensis might provide it a competitive advantage under increased precipitation. Our findings suggest that increasing precipitation may slow down shrub encroachment by facilitating herbaceous growth in Mongolian grasslands, and consequently affect the forage value and carbon budget in these ecosystems. 

Acidogenic anaerobic fermentation route was explored for the production of bioethanol and volatile fatty acids (VFA) from the press mud (PM) obtained from sugar mill. Slurry was prepared from PM having 10% of total solids and the same was hydrolyzed under acidic thermal conditions. Both press mud slurry (PMS) and pre-treated press mud slurry (PTPMS) was used as feedstock with mixed microbial consortia (MMC) and enriched mixed microbial consortia (EMMC). Mix of bioethanol and VFA were obtained in all the four cases (PMS-MMC, PMS-EMMC, PTPMS-EMC and PTPMS-EMMC), but, bioethanol and VFA yield of 0.04 g/g and 0.27 g/g, respectively obtained from PTPMS with EMMC was found to be comparatively higher. Control experiments carried out with glucose yielded bioethanol and VFA of 0.042 g/g and 0.28 g/g, respectively demonstrating that the organism was using reducible sugars in the feedstock for the generation of bioethanol by simultaneously producing the VFA from COD.

In order to identify a potential surrogate of planktonic ciliate communities for marine bioassessments and evaluating biological conservations, the different taxonomic/numerical resolutions and taxa as surrogates were studied in Jiaozhou Bay, northern China during a 1-year cycle (June 2007-May 2008).Samples were collected biweekly from a depth of 1 m at each of five sites. A range of physicochemical parameters were also measured in order to determine water quality.The genus- and family-level resolutions maintained sufficient information to evaluate the ecological patterns of the ciliate communities in response to environmental status. The non-loricate oligotrichous ciliate assemblages in both abundance and occurrence may be used as a surrogate of planktonic ciliate communities. Heavy data transformations were an optimal strategy for the species level of planktonic ciliates, while mild data transformations were for the higher. The ordination patterns based on species biomass, occurrence, and biomass/abundance ratio matrices were significantly consistent with that of species abundance data.The results suggest that the use of simplifications at both taxonomic and numerical resolutions are time-efficient and would allow improving sampling strategies of large spatial/temporal scale monitoring programs and biological conservation researches in the marine ecosystem with a relative paucity of scientists.

Lower Mekong Basin (LMB) experiences a recurrent drought phenomenon. However, few studies have focused on drought monitoring in this region due to lack of ground observations. The newly released Climate Hazards Group Infrared Precipitation with Station data (CHIRPS) with a long-term record and high resolution has a great potential for drought monitoring. Based on the assessment of CHIRPS for capturing precipitation and monitoring drought, this study aims to evaluate the drought condition in LMB by using satellite-based CHIRPS from January 1981 to July 2016. The Standardized Precipitation Index (SPI) at various time scales (1–12-month) is computed to identify and describe drought events. Results suggest that CHIRPS can properly capture the drought characteristics at various time scales with the best performance at three-month time scale. Based on high-resolution long-term CHIRPS, it is found that LMB experienced four severe droughts during the last three decades with the longest one in 1991–1994 for 38 months and the driest one in 2015–2016 with drought affected area up to 75.6%. Droughts tend to occur over the north and south part of LMB with higher frequency, and Mekong Delta seems to experience more long-term and extreme drought events. Severe droughts have significant impacts on vegetation condition.