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Biomass pre-treatment is a key step in achieving the economic competitiveness of biomass conversion. In the present work, an imidazole pre-treatment process was performed and evaluated using wheat straw and eucalyptus residues as model feedstocks for agriculture and forest-origin biomasses, respectively. Results showed that imidazole is an efficient pre-treatment agent; however, better results were obtained for wheat straw due to the recalcitrant behavior of eucalyptus residues. The temperature had a stronger effect than time on wheat straw pre-treatment but at 160 °C and 4 h, similar results were obtained for cellulose and hemicellulose content from both biomasses (ca. 54% and 24%, respectively). Lignin content in the pre-treated solid was higher for eucalyptus residues (16% vs. 4%), as expected. Enzymatic hydrolysis, applied to both biomasses after different pre-treatments, revealed that results improved with increasing temperature/time for wheat straw. However, these conditions had no influence on the results for eucalyptus residues, with very low glucan to glucose enzymatic hydrolysis yield (93% for wheat straw vs. 40% for eucalyptus residues). Imidazole can therefore be considered as a suitable solvent for herbaceous biomass pre-treatment.

Metal accumulation by Juncus maritimus and the effect this plant might have on the physico-chemical composition of sediments, from Douro river estuary (NW Portugal), were investigated through one year of plant's life. The contents of Al, Cd, Cr, Cu, Fe, Mn, Ni, Pb and Zn were determined (by atomic absorption spectrophotometry) in sediments, rhizosediments (those among plant roots and rhizomes) and different tissues of J. maritimus. Two estuarine sites with different characteristics were studied, one a sandy sediment with relatively low organic matter content, the other a muddy site. The role of the plant seemed to be markedly dependent on the sediment composition. At the sandy site, significant variations throughout the year (a decrease from winter to summer and an increase in autumn) either in rhizosediment and sediment or in J. maritimus roots were only observed in Cd and Cu levels. These variations were the same in both compartments, probably caused by tidal water movements and the activity of the plant. At the muddy site, variations throughout the year were observed for all studied elements but Pb. Changes in the Cd and Zn contents of roots were opposite to those in the rhizosediment (uptake of Cd and Zn by J. maritimus roots in summer may have caused a decrease in rhizosediment levels). Fe and Mn showed similar patterns of variation in both roots and rhizosediment (contents significantly increasing in summer). Higher contents of Fe and Mn in roots in summer could be related to changes in mass, higher availability of the elements, or accumulation at the surface of the root in (hydr)oxides forms. For the remaining elements no significant correlations between rhizosediment and roots variations were observed, indicating that their uptake and release by roots were not based on single exchanges with the sediment. J. maritimus showed capacity to accumulate Cu, Zn and particularly Cd, thus appearing to be useful for the phytostabilization of these metals.

Can intraspecific diversity functionally supersede interspecific diversity? Recent studies have established the ecological effects of intraspecific variation on a number of ecosystem dynamics including resilience and productivity and we hypothesised that they may functionally exceed those of species diversity. We focused on a coastal ecosystem dominated by two coexisting bioengineering mussel species, one of which, Perna perna, displays two distinct phylogeographic lineages. A manipulative field experiment revealed greater habitat structural complexity and a more benign microscale environment within beds of the eastern lineage than those of the western lineage or the second species (Mytilus galloprovincialis); the latter two did not differ. Similarly, while infaunal species abundance and biomass differed significantly between the two lineages of Perna, there was no such difference between Mytilus and the western Perna lineage. The evenness and diversity of associated infaunal assemblages responded differently. Diversity differed relatively weakly between species, while evenness showed a very strong difference between conspecific lineages. Our results show that variation within a species can functionally supersede diversity between species. As the two P. perna lineages have different physiological tolerances, we expect them to react differently to environmental change. Our findings indicate that predicting the ecosystem-level consequences of climate change requires an understanding of the relative strengths of within- and between-species differences in functionality.

Seaweed assemblages represent the dominant autotrophic biomass in many coastal environments, playing a central structural and functional role in several ecosystems. In Europe, seaweed assemblages are highly diverse systems. The combined seaweed flora of different European regions hold around 1550 species (belonging to nearly 500 genera), with new species continuously uncovered, thanks to the emergence of molecular tools. In this manuscript we review the effects of global and local stressors on European seaweeds, their communities, and ecosystem functioning. Following a brief review on the present knowledge on European seaweed diversity and distribution, and the role of seaweed communities in biodiversity and ecosystem functioning, we discuss the effects of biotic homogenization (invasive species) and global climate change (shifts in bioclimatic zones and ocean acidification) on the distribution of individual species and their effect on the structure and functioning of seaweed communities. The arrival of new introduced species (that already account for 5–10% of the European seaweeds) and the regional extirpation of native species resulting from oceans' climate change are creating new diversity scenarios with undetermined functional consequences. Anthropogenic local stressors create additional disruption often altering dramatically assemblage's structure. Hence, we discuss ecosystem level effects of such stressors like harvesting, trampling, habitat modification, overgrazing and eutrophication that impact coastal communities at local scales. Last, we conclude by highlighting significant knowledge gaps that need to be addressed to anticipate the combined effects of global and local stressors on seaweed communities. With physical and biological changes occurring at unexpected pace, marine phycologists should now integrate and join their research efforts to be able to contribute efficiently for the conservation and management of coastal systems.

Coastal shallow lagoons are considered to be highly important systems, which have specific biogeochemical cycles and characteristics. The assessment of sediment-water interfaces is essential to understand nutrient dynamics and to evaluate the vulnerability to eutrophication, especially in regions of restricted water exchange (RRE), such as the Ria Formosa, which have natural conditions for the accumulation of nutrients. Water samples were collected during the years of 2006 and 2007-08 for nutrients, chlorophyll a and dissolved oxygen. Sediment samples were also collected for pore water nutrients and microphytobenthic chlorophyll a. Measurements of temperature, salinity and photosynthetic active radiation were also taken. The lagoon salinity is affected by occasional strong rainfall events. From comparison with previous work, a decrease in the nitrogen concentration in the water column can be observed, which may indicate an improvement of the water quality. Pore water nutrient concentrations were significantly larger than in the water column. Sediment-water exchanges are considered to be the most important processes in nutrient dynamics of the lagoon. Benthic microalgal biomass was also large compared with that of the phytoplankton. It represents about 99% of the total microalgal chlorophyll biomass of the system. The lagoon also contains (discontinuous) meadows of intertidal seagrass, but we did not study these. Due to the importance of sediments, the standard monitoring plans required by the Water Framework Directive may fail to track changes in the nutrient conditions and the microalgal responses to them.

Water is a scarce resource in the Mediterranean region where adverse climatic conditions promoting water shortages tend to increase with climate change. Under water scarcity conditions and high atmosphere evaporative demand, the risks of decreased water quality, and land salinization are major threats to the sustainability of irrigated agriculture in this region. The assessment of the quality of irrigation water is increasingly important to ensure the maintenance of long-term salt balance at a crop, farm, and regional scale. This study is focused on the spatial and temporal variability of water quality for irrigation in the Alqueva reservoir (Southern Portugal). The assessment was performed every 2 months during a distinctive drought year (2017) and included inorganic ions (Na+, Ca2+, Mg2+, K+, NH4+, Cl-, F-, SO42-, NO3-, and NO2-), pH, and electric conductivity (ECW) of water. Sodium adsorption ratio (SAR) was calculated, and potential soil permeability problems were estimated. The assessment showed significantly higher values of the physicochemical parameters in the most upstream sites, located near tributaries inflows, and an upward trend in ion concentrations throughout the year, with significantly higher concentrations of Na+, Mg2+, Cl-, and SO42, registered through May to November, reflecting the severe drought felt in the summer, autumn, and winter. The evaluation of water quality for irrigation indicated a slight to moderate risk of reduced infiltration rates, which should be considered whenever sprinkler irrigation is used, mainly in fine-textured soils, which are prevalent in the irrigated area. The multivariate statistical approach, using principal component analysis and factor analysis, identified two principal components related to salinity and nutrient concentrations. The cluster analysis revealed three groups of similarity between samples pointing to a more time- than space-controlled pattern. Overall, the temporal dynamics of the water physicochemical parameters could indicate that an abnormal annual distribution of precipitation and temperature may distort seasonal differences. To prevent water and soil degradation, a more frequent assessment of the water quality should be considered, allowing for the selection of appropriate soil and water management measures in irrigated areas.

Fly ash (FA) from biomass combustion and biological sludge (S), both wastes from the pulp and paper industry, were granulated in different proportions (90% FA+10% S, and 70% FA+30% S w/w, dry weight basis, dw) and used to recover the functionality of soils affected by mining activities (Aljustrel, Iberian Pyrite Belt), with and without the application of municipal solid waste compost (MSWC). Application doses of both mixtures were 2.5, 5.0 and 10% (w/w, dw). These materials corrected soil acidity to circumneutral values and increased extractable P and K concentrations. A significant increase in soil organic matter (from 0.6 to 0.8-1.5% w/w, dw) and N content (from 0.04 to 0.09-0.12% w/w, dw) was also observed, but only when MSWC was applied. The soil was already heavily contaminated with Cu, Pb and Zn and the application of amendments did not increase their pseudo-total concentrations. The CaCl2 extractable fractions of both Cu and Zn decreased to very low values. The improvement in soil quality, compared to fertilizer only treatment, was further evidenced by the increase in some soil enzymatic activities (dehydrogenase, β-glucosidase and cellulase), with a better response for the granules with the higher proportion of biological sludge, as well as by the decrease in the soil-water extract toxicity towards different organisms (Daphnia magna, Thamnocephalus platyurus, and Pseudokirchneriella subcapitata). Agrostis tenuis germinated and grew during the first month only in the amended pots, but, after that, a considerable phytotoxic effect was evident. This was mainly attributed to salt stress or to some specific ionic toxicity. In conclusion, to establish a long-term plant cover in mining soils amended with biomass ash-based materials, the selection of plants with higher resistance to salinity and/or the stabilization of the amendments, to reduce their soluble salt content, is recommended.