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As atmospheric levels of CO(2) increase, reef-building corals are under greater stress from both increased sea surface temperatures and declining sea water pH. To date, most studies have focused on either coral bleaching due to warming oceans or declining calcification due to decreasing oceanic carbonate ion concentrations. Here, through the use of physiology measurements and cDNA microarrays, we show that changes in pH and ocean chemistry consistent with two scenarios put forward by the Intergovernmental Panel on Climate Change (IPCC) drive major changes in gene expression, respiration, photosynthesis and symbiosis of the coral, Acropora millepora, before affects on biomineralisation are apparent at the phenotype level. Under high CO(2) conditions corals at the phenotype level lost over half their Symbiodinium populations, and had a decrease in both photosynthesis and respiration. Changes in gene expression were consistent with metabolic suppression, an increase in oxidative stress, apoptosis and symbiont loss. Other expression patterns demonstrate upregulation of membrane transporters, as well as the regulation of genes involved in membrane cytoskeletal interactions and cytoskeletal remodeling. These widespread changes in gene expression emphasize the need to expand future studies of ocean acidification to include a wider spectrum of cellular processes, many of which may occur before impacts on calcification.

The Abrolhos Bank (eastern Brazil) encompasses the largest and richest coral reefs of the South Atlantic. Coral reef benthic assemblages of the region were monitored from 2003 to 2008. Two habitats (pinnacles' tops and walls) were sampled per site with 3-10 sites sampled within different reef areas. Different methodologies were applied in two distinct sampling periods: 2003-2005 and 2006-2008. Spatial coverage and taxonomic resolution were lower in the former than in the latter period. Benthic assemblages differed markedly in the smallest spatial scale, with greater differences recorded between habitats. Management regimes and biomass of fish functional groups (roving and territorial herbivores) had minor influences on benthic assemblages. These results suggest that local environmental factors such as light, depth and substrate inclination exert a stronger influence on the structure of benthic assemblages than protection from fishing. Reef walls of unprotected coastal reefs showed highest coral cover values, with a major contribution of Montastraea cavernosa (a sediment resistant species that may benefit from low light levels). An overall negative relationship between fleshy macroalgae and slow-growing reef-building organisms (i.e. scleractinians and crustose calcareous algae) was recorded, suggesting competition between these organisms. The opposite trend (i.e. positive relationships) was recorded for turf algae and the two reef-building organisms, suggesting beneficial interactions and/or co-occurrence mediated by unexplored factors. Turf algae cover increased across the region between 2006 and 2008, while scleractinian cover showed no change. The need of a continued and standardized monitoring program, aimed at understanding drivers of change in community patterns, as well as to subsidize sound adaptive conservation and management measures, is highlighted.

A theoretical basis for Ecosystem-based Fisheries Management (EBFM) was derived for pelagic fish by applying marine ecology theory of analytical relationships of predator-prey biological production transfers between trophic levels to FAO guidelines for an ecosystem approach to fisheries. The aim is to describe a simple method for data-limited fisheries to estimate ecosystem-based FMSY and how EBFM modellers could mimic the way natural fish communities function for maintaining ecological processes of biological production, biomass and ecosystem stability. Ecosystem stability (ES) FMSY were estimated by proportion of biological production allocated to predators, giving ESFMSY of 0.23 for small pelagic and 0.27 for pelagic finfish, prioritising ecosystem over economics. To maintain both stability and biomass (SB) a full pelagic EBFM SBFMSY of about 0.08 was obtained for both small pelagic and pelagic finfish, having mostly ecosystem considerations. As the FMSY are single-species averages of catchable species targeted in a specific trophic level, multispecies fishing mortalities were proportioned by the biological production of each species in the trophic level. This way catches for each species are consistent with the average ecosystem FMSY for a trophic level. The theoretical estimates gave similar results to other fisheries for sustainable fish catches that maintain the fishery ecosystem processes. They were also tested using six tropical Ecopath Models and showed the effects of imposing commercial fishing mortalities on predominantly EBFM conditions. The ecosystem stability ESFMSY is suggested to be investigated for sustainable fish catches and the full EBFM SBFMSY for protected areas or recovery of heavily depleted stocks.

Coastal systems are increasingly threatened by multiple local anthropogenic and global climatic stressors. With the difficulties in remediating global stressors, management requires alternative approaches that focus on local scales. We used manipulative experiments to test whether reducing local stressors (sediment load and nutrient concentrations) can improve the resilience of foundation species (canopy algae along temperate rocky coastlines) to future projected global climate stressors (high wave exposure, increasing sea surface temperature), which are less amenable to management actions. We focused on Fucoids (Cystoseira barbata) along the north-western Adriatic coast in the Mediterranean Sea because of their ecological relevance, sensitivity to a variety of human impacts, and declared conservation priority. At current levels of sediment and nutrients, C. barbata showed negative responses to the simulated future scenarios of high wave exposure and increased sea surface temperature. However, reducing the sediment load increased the survival of C. barbata recruits by 90.24% at high wave exposure while reducing nutrient concentrations resulted in a 20.14% increase in the survival and enhanced the growth of recruited juveniles at high temperature. We conclude that improving water quality by reducing nutrient concentrations, and particularly the sediment load, would significantly increase the resilience of C. barbata populations to projected increases in climate stressors. Developing and applying appropriate targets for specific local anthropogenic stressors could be an effective management action to halt the severe and ongoing loss of key marine habitats.

The aesthetic appreciation of natural places is one of the most fundamental ways in which people relate to their environment. It provides wellbeing, an opportunity for recreation and reflection, a sense of place, and cultural enrichment. It also motivates people to take care of natural places and to conserve them for current and future appreciation. Aesthetically valuable places also support significant economic activity. However, there is little guidance available to assist environmental managers and policy-makers to consider and integrate aesthetic values into decision-making processes. In this study, we present an approach for developing robust and practical indicators of aesthetic value to enable environmental managers to consider, assess and report on aesthetic condition and trend. We demonstrate its utility using the case of the Great Barrier Reef, a region currently undergoing significant social, economic and environmental change and an area formally protected, in part, for its aesthetic values. A qualitative scoping study with 30 key informants identified over 180 potential qualities contributing to reef aesthetics. We tested five for their utility in capturing key aspects of the coral reef aesthetic: (i) coral cover, (ii) coral pattern, (iii) coral topography, (iv) fish abundance, and (v) visibility. We asked 1,417 online Australians to aesthetically rate 50 out of 181 underwater coral reef images that varied in relation to these five attributes. Coral topography, fish abundance, and visibility were significantly correlated with aesthetic ratings, whilst coral cover and coral pattern were not. We also tested for demographic patterns in aesthetic ratings. Our pilot study has demonstrated that readily measurable characteristics of coral reefs can provide useful indicators of aesthetic quality, opening up opportunities for coral reef managers and policymakers to assess and track changes in aesthetics in ways that are relevant to the public. There is considerable scope to further advance capacity for monitoring and managing aesthetic values of coral reefs through additional research that resolves nuances in the meanings associated with aesthetics in coral reef settings.

High-latitude reefs support unique ecological communities occurring at the biogeographic boundaries between tropical and temperate marine ecosystems. Due to their lower ambient temperatures, they are regarded as potential refugia for tropical species shifting poleward due to rising sea temperatures. However, acute warming events can cause rapid shifts in the composition of high-latitude reef communities, including range contractions of temperate macroalgae and bleaching-induced mortality in corals. While bleaching has been reported on numerous high-latitude reefs, post-bleaching trajectories of benthic communities are poorly described. Consequently, the longer-term effects of thermal anomalies on high-latitude reefs are difficult to predict. Here, we use an autonomous underwater vehicle to conduct repeated surveys of three 625 m(2) plots on a coral-dominated high-latitude reef in the Houtman Abrolhos Islands, Western Australia, over a four-year period spanning a large-magnitude thermal anomaly. Quantification of benthic communities revealed high coral cover (>70%, comprising three main morphospecies) prior to the bleaching event. Plating Montipora was most susceptible to bleaching, but in the plot where it was most abundant, coral cover did not change significantly because of post-bleaching increases in branching Acropora. In the other two plots, coral cover decreased while macroalgal cover increased markedly. Overall, coral cover declined from 73% to 59% over the course of the study, while macroalgal cover increased from 11% to 24%. The significant differences in impacts and post-bleaching trajectories among plots underline the importance of understanding the underlying causes of such variation to improve predictions of how climate change will affect reefs, especially at high-latitudes.

Bien que l'on sache beaucoup de choses sur les facteurs qui contrôlent chaque composante du cycle terrestre de l'azote (N), il est moins clair comment ces facteurs affectent la disponibilité totale de l'azote, la somme des formes organiques et inorganiques potentiellement disponibles pour les micro-organismes et les plantes. Cela est particulièrement vrai pour les écosystèmes pauvres en N tels que les terres arides, qui sont très sensibles au changement climatique et aux processus de désertification pouvant entraîner la perte de nutriments du sol tels que N. Nous avons évalué la corrélation entre différents facteurs climatiques, abiotiques, végétaux et liés aux nutriments et la disponibilité de N dans les prairies semi-arides de Stipa tenacissima le long d'un large gradient d'aridité allant de l'Espagne à la Tunisie. L'aridité avait la relation la plus forte avec la disponibilité de l'azote, suggérant l'importance des contrôles abiotiques sur le cycle de l'azote dans les terres arides. L'aridité semble moduler les effets du pH, de la couverture végétale et du C organique (CO) sur la disponibilité de l'azote. Nos résultats suggèrent que les taux de transformation de l'azote, qui sont largement influencés par les variations de l'humidité du sol, ne sont pas les moteurs directs de la disponibilité de l'azote dans les prairies étudiées. Au contraire, la forte relation entre l'aridité et la disponibilité de l'azote pourrait être motivée par des effets indirects qui opèrent sur de longues échelles de temps (des décennies à des millénaires), y compris à la fois biotiques (par exemple, la couverture végétale) et abiotiques (par exemple, le CO et le pH du sol). Si ces facteurs sont en fait plus importants que les effets à court terme des précipitations sur les taux de transformation de l'azote, alors nous pourrions nous attendre à observer une diminution décalée de la disponibilité de l'azote en réponse à l'augmentation de l'aridité. Néanmoins, nos résultats suggèrent que l'augmentation de l'aridité prévue avec le changement climatique en cours réduira la disponibilité de l'azote dans le bassin méditerranéen, affectant l'absorption des nutriments végétaux et la production primaire nette dans les prairies semi-arides de cette région. Si bien se sabe mucho sobre los factores que controlan cada componente del ciclo del nitrógeno (N) terrestre, está menos claro cómo estos factores afectan la disponibilidad total de N, la suma de formas orgánicas e inorgánicas potencialmente disponibles para microorganismos y plantas. Esto es particularmente cierto para los ecosistemas pobres en N, como las tierras secas, que son altamente sensibles al cambio climático y los procesos de desertificación que pueden conducir a la pérdida de nutrientes del suelo, como N. Evaluamos cómo los diferentes factores climáticos, abióticos, vegetales y relacionados con los nutrientes se correlacionan con la disponibilidad de N en los pastizales semiáridos de Stipa tenacissima a lo largo de un amplio gradiente de aridez desde España hasta Túnez. La aridez tuvo la relación más fuerte con la disponibilidad de N, lo que sugiere la importancia de los controles abióticos en el ciclo de N en las tierras secas. La aridez pareció modular los efectos del pH, la cobertura vegetal y el C orgánico (OC) sobre la disponibilidad de N. Nuestros resultados sugieren que las tasas de transformación de N, que son impulsadas en gran medida por las variaciones en la humedad del suelo, no son los impulsores directos de la disponibilidad de N en los pastizales estudiados. Más bien, la fuerte relación entre la aridez y la disponibilidad de N podría ser impulsada por efectos indirectos que operan en escalas de tiempo largas (décadas a milenios), incluyendo tanto bióticos (por ejemplo, cobertura vegetal) como abióticos (por ejemplo, OC y pH del suelo). Si estos factores son de hecho más importantes que los efectos a corto plazo de la precipitación en las tasas de transformación de N, entonces podríamos esperar observar una disminución retardada en la disponibilidad de N en respuesta al aumento de la aridez. Sin embargo, nuestros resultados sugieren que el aumento de la aridez predicho con el cambio climático en curso reducirá la disponibilidad de N en la cuenca mediterránea, lo que afectará la absorción de nutrientes de las plantas y la producción primaria neta en los pastizales semiáridos en toda esta región. While much is known about the factors that control each component of the terrestrial nitrogen (N) cycle, it is less clear how these factors affect total N availability, the sum of organic and inorganic forms potentially available to microorganisms and plants. This is particularly true for N-poor ecosystems such as drylands, which are highly sensitive to climate change and desertification processes that can lead to the loss of soil nutrients such as N. We evaluated how different climatic, abiotic, plant and nutrient related factors correlate with N availability in semiarid Stipa tenacissima grasslands along a broad aridity gradient from Spain to Tunisia. Aridity had the strongest relationship with N availability, suggesting the importance of abiotic controls on the N cycle in drylands. Aridity appeared to modulate the effects of pH, plant cover and organic C (OC) on N availability. Our results suggest that N transformation rates, which are largely driven by variations in soil moisture, are not the direct drivers of N availability in the studied grasslands. Rather, the strong relationship between aridity and N availability could be driven by indirect effects that operate over long time scales (decades to millennia), including both biotic (e.g. plant cover) and abiotic (e.g. soil OC and pH). If these factors are in fact more important than short-term effects of precipitation on N transformation rates, then we might expect to observe a lagged decrease in N availability in response to increasing aridity. Nevertheless, our results suggest that the increase in aridity predicted with ongoing climate change will reduce N availability in the Mediterranean basin, impacting plant nutrient uptake and net primary production in semiarid grasslands throughout this region. في حين أن الكثير معروف عن العوامل التي تتحكم في كل مكون من مكونات دورة النيتروجين الأرضية (N)، إلا أنه من غير الواضح كيف تؤثر هذه العوامل على إجمالي توافر N، وهو مجموع الأشكال العضوية وغير العضوية التي يحتمل أن تكون متاحة للكائنات الحية الدقيقة والنباتات. وينطبق هذا بشكل خاص على النظم الإيكولوجية التي تعاني من فقر النيتروجين مثل الأراضي الجافة، وهي حساسة للغاية لتغير المناخ وعمليات التصحر التي يمكن أن تؤدي إلى فقدان مغذيات التربة مثل النيتروجين. قمنا بتقييم كيفية ارتباط العوامل المناخية واللاأحيائية والنباتية والمغذيات المختلفة بتوافر النيتروجين في المراعي شبه القاحلة على طول تدرج جفاف واسع من إسبانيا إلى تونس. كان للجفاف أقوى علاقة بتوافر النيتروجين، مما يشير إلى أهمية الضوابط اللاأحيائية في دورة النيتروجين في الأراضي الجافة. يبدو أن الجفاف يعدل تأثيرات الأس الهيدروجيني والغطاء النباتي و C العضوي (OC) على توافر N. تشير نتائجنا إلى أن معدلات تحول N، التي تحركها إلى حد كبير الاختلافات في رطوبة التربة، ليست هي الدوافع المباشرة لتوافر N في الأراضي العشبية المدروسة. بدلاً من ذلك، يمكن أن تكون العلاقة القوية بين الجفاف وتوافر N مدفوعة بالتأثيرات غير المباشرة التي تعمل على نطاقات زمنية طويلة (من عقود إلى آلاف السنين)، بما في ذلك كل من الحيوية (مثل الغطاء النباتي) واللاأحيائية (مثل OC التربة ودرجة الحموضة). إذا كانت هذه العوامل في الواقع أكثر أهمية من الآثار قصيرة الأجل لهطول الأمطار على معدلات تحول N، فقد نتوقع ملاحظة انخفاض متأخر في توافر N استجابة لزيادة الجفاف. ومع ذلك، تشير نتائجنا إلى أن الزيادة في القحولة المتوقعة مع تغير المناخ المستمر ستقلل من توافر N في حوض البحر الأبيض المتوسط، مما يؤثر على امتصاص المغذيات النباتية وصافي الإنتاج الأولي في المراعي شبه القاحلة في جميع أنحاء هذه المنطقة.