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Research data keyboard_double_arrow_right Dataset 2021Publisher:PANGAEA Funded by:ARC | Discovery Projects - Gran..., ARC | Discovery Projects - Gran..., ARC | Ocean acidification and r...ARC| Discovery Projects - Grant ID: DP170101722 ,ARC| Discovery Projects - Grant ID: DP150104263 ,ARC| Ocean acidification and rising sea temperature effect on fishConi, Ericka O C; Nagelkerken, Ivan; Ferreira, Camilo M; Connell, Sean D; Booth, David J;Poleward range extensions by warm-adapted sea urchins are switching temperate marine ecosystems from kelp-dominated to barren-dominated systems that favour the establishment of range-extending tropical fishes. Yet, such tropicalization may be buffered by ocean acidification, which reduces urchin grazing performance and the urchin barrens that tropical range-extending fishes prefer. Using ecosystems experiencing natural warming and acidification, we show that ocean acidification could buffer warming-facilitated tropicalization by reducing urchin populations (by 87%) and inhibiting the formation of barrens. This buffering effect of CO2 enrichment was observed at natural CO2 vents that are associated with a shift from a barren-dominated to a turf-dominated state, which we found is less favourable to tropical fishes. Together, these observations suggest that ocean acidification may buffer the tropicalization effect of ocean warming against urchin barren formation via multiple processes (fewer urchins and barrens) and consequently slow the increasing rate of tropicalization of temperate fish communities. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-07-26.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2023Embargo end date: 11 Oct 2023Publisher:Dryad Ding, Fangyu; Ge, Honghan; Ma, Tian; Wang, Qian; Hao, Mengmeng; Li, Hao; Zhang, Xiao-Ai; Maude, Richard James; Wang, Liping; Jiang, Dong; Fang, Li-Qun; Liu, Wei;# Data on: Projecting spatiotemporal dynamics of severe fever with thrombocytopenia syndrome in the mainland of China [https://doi.org/10.5061/dryad.vdncjsz1z](https://doi.org/10.5061/dryad.vdncjsz1z) This dataset is the data used in the paper of Global change biology entitled "Projecting spatiotemporal dynamics of severe fever with thrombocytopenia syndrome in the mainland of China". We use an integrated multi-model, multi-scenario framework to assess the impact of global climate change on SFTS disease in the mainland of China. ## Description of the data and file structure The predicted annual incidence of national SFTS cases with or without human population reduction under four RCPs under different climate change scenarios (RCP2.6, RCP4.5, RCP6.0, and RCP8.5) in the 2030s, 2050s, and 2080s. The value represents the annual incidence, and the unit is 105/year. The Dataset-1 file includes the predicted annual incidence of national SFTS cases with a fixed future human population under different climate change scenarios (RCP2.6, RCP4.5, RCP6.0, and RCP8.5) in the 2030s, 2050s, and 2080s. The Dataset-2 file includes the predicted annual incidence of national SFTS cases in the 2030s, 2050s, and 2080s with human population reduction (SSP2) under four RCPs. ## Sharing/Access information Data was derived from the following sources: * https://doi.org/10.1111/gcb.16969 This dataset is the data used in the paper of Global change biology entitled "Projecting spatiotemporal dynamics of severe fever with thrombocytopenia syndrome in the mainland of China". We use an integrated multi-model, multi-scenario framework to assess the impact of global climate change on SFTS disease in the mainland of China. The SFTS incidence in three time periods (2030-2039, 2050-2059, 2080-2089) is predicted to be increased as compared to the 2010s in the context of various RCPs. The projected spatiotemporal dynamics of SFTS will be heterogeneous across provinces. Notably, we predict possible outbreaks in Xinjiang and Yunnan in the future, where only sporadic cases have been reported previously. These findings highlight the need for population awareness of SFTS in endemic regions, and enhanced monitoring in potential risk areas. See the Materials and methods section in the original paper. The code used in the statistical analyses are present in the paper and/or the Supplementary Materials.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2020 United StatesPublisher:U.S. Geological Survey Authors: Marra, Kristen R;doi: 10.5066/p9on85ac
This data release contains the boundaries of assessment units and input data for the assessment of Oil and Gas Resources in the Mancos-Menefee Composite and Underlying Todilto Total Petroleum Systems of New Mexico and Colorado. The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is defined within the context of the higher-level Total Petroleum System. The Assessment Unit is shown herein as a geographic boundary interpreted, defined, and mapped by the geologist responsible for the province and incorporates a set of known or postulated oil and (or) gas accumulations sharing similar geologic, geographic, and temporal properties within the Total Petroleum System, such as source rock, timing, migration pathways, trapping mechanism, and hydrocarbon type. The Assessment Unit boundary is defined geologically as the limits of the geologic elements that define the Assessment Unit, such as limits of reservoir rock, geologic structures, source rock, and seal lithologies. The only exceptions to this are Assessment Units that border the Federal-State water boundary. In these cases, the Federal-State water boundary forms part of the Assessment Unit boundary. Methodology of assessments are documented in USGS Data Series 547 for continuous assessments (https://pubs.usgs.gov/ds/547) and USGS DDS69-D, Chapter 21 for conventional assessments (https://pubs.usgs.gov/dds/dds-069/dds-069-d/REPORTS/69_D_CH_21.pdf). See supplemental information for a detailed list of files included this data release.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2021Embargo end date: 11 Oct 2021Publisher:Dryad Authors: Lempidakis, Emmanouil; Ross, Andrew; Börger, Luca; Shepard, Emily;Variable list for files: SW wind - Section table on Skomer (Standardised).csv / NW wind - Section table on Skomer (Standardised).csv / SE wind - Section table on Skomer (Standardised).csv /NE wind - Section table on Skomer (Standardised).csv and SW wind - Sections on Skokholm (Standardised).csv FID: Row ID (for use in ArcGIs) Count: Number of guillemots per section Area: Total area of each section () Density: Density of guillemots per section (number of birds/ Area) X_Centre: X coordinate of the central point of each section Y_Centre: Y coordinate of the central point of each section Sector: Section ID MeanUMedian; MeanUIQR, MeanUSkewness, MeanUCV: Median, interquartile range,skewness and coefficient of variation of mean wind speed per section HorizontalMedian;HorizontalIQR,HorizontalSkewness,HorizontalCV: Median, interquartile range,skewness and coefficient of variation of horizontal wind speed per section PMedian;PIQR,PSkewness,PCV: Median, interquartile range,skewness and coefficient of variation of preessure per section TKEMedian;TKEIQR,TKESkewness,TKECV: Median, interquartile range,skewness and coefficient of variation of turbulent kinetic energy per section TIMedian;TIIQR,TISkewness,TICV: Median, interquartile range,skewness and coefficient of variation of turbulence intensity per section U_2Median;lU_2IQR;U_2Skewness;U_2CV: Median, interquartile range,skewness and coefficient of variation of vertical wind speed per section EpsilonMedian;EpsilonIQR,EpsilonSkewness,EpsilonCV: Median, interquartile range,skewness and coefficient of variation of turbulent dissipation rate per section NutMedian;NutIQR,NutSkewness,NutCV: Median, interquartile range,skewness and coefficient of variation of kinematic viscosity per section GustsMedian;GustsIQR,GustsSkewness,GustsCV: Median, interquartile range,skewness and coefficient of variation of instataneous gusts per section MeanSectorSlope: Mean slope per section ColPresence: Binomial variable, indicating whether a section has birds or not. This variable varies with classification, based on either the count of birds or the density per section Variable list for file: Section table on Skomer - with Mean cliff orientation and Slope (NOT-Standardised).csv FID: Row ID (for use in ArcGIs) Count: Number of guillemots per section Area: Total area of each section () Density: Density of guillemots per section (number of birds/ Area) X_Centre: X coordinate of the central point of each section Y_Centre: Y coordinate of the central point of each section Sector: Section ID MeanSectorSlope: Mean slope per section MeanSectorAspectCircular: Mean cliff orientation per section ApsectClass: Factor indicating whether the mean cliff orientation is lee- or windward to the SW wind ColPresence: Binomial variable, indicating whether a section has birds or not. This variable varies with classification, based on either the count of birds or the density per section Variable list for file: SW wind - Sections on Skokholm to predict colonies using cliff orientation and slope model from Skomer (NON - Standardised).csv FID: Row ID (for use in ArcGIs) Count: Number of guillemots per section Area: Total area of each section () Density: Density of guillemots per section (number of birds/ Area) Sector: Section ID MeanSectorSlope: Mean slope per section MeanSectorAspectCircular: Mean cliff orientation per section Wind is fundamentally related to shelter and flight performance: two factors that are critical for birds at their nest sites. Despite this, airflows have never been fully integrated into models of breeding habitat selection, even for well-studied seabirds. Here we use computational fluid dynamics to provide the first assessment of whether flow characteristics (including wind speed and turbulence) predict the distribution of seabird colonies, taking common guillemots (Uria aalge) breeding on Skomer island as our study system. This demonstrates that occupancy is driven by the need to shelter from both wind and rain/ wave action, rather than airflow characteristics alone. Models of airflows and cliff orientation both performed well in predicting high quality habitat in our study site, identifying 80% of colonies and 93% of avoided sites, as well as 73% of the largest colonies on a neighbouring island. This suggests generality in the mechanisms driving breeding distributions, and provides an approach for identifying habitat for seabird reintroductions considering current and projected wind speeds and directions. Methods detailed in manuscript: https://doi.org/10.1111/ecog.05733.
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visibility 33visibility views 33 download downloads 2 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2023Embargo end date: 24 Sep 2023Publisher:Dryad Cresswell, Anna; Renton, Michael; Langlois, Timothy; Thomson, Damian; Lynn, Jasmine; Claudet, Joachim;# Coral reef state influences resilience to acute climate-mediated disturbances\_Table S1 [https://doi.org/10.5061/dryad.rfj6q57gz](https://doi.org/10.5061/dryad.rfj6q57gz) The dataset provides a summary of all publications included in the analysis for this study and the key statistics obtained from the studies and used in the analyses. The dataset includes details about the publication, spatial identifiers (e.g. realm, province, ecoregion) unique site code, information on the disturbance type and timing, the pre-and post-disturbance coral cover, the 5-year annual recovery rate, the recovery shape and recovery completeness classifications. Please see details Methods in the journal article "Coral reef state influences resilience to acute climate-mediated disturbances" as published in Global Ecology and Biogeography. ## Description of the data and file structure Each column provides the following information: | Column | Detail | | ------ | ------ | | Realm | All studies were assigned to an ‘ecoregion’, ‘province’ and ‘realm’ based on their spatial location in Spalding et al. (2007)’s spatial classification system for coastal and shelf waters. | | Province | All studies were assigned to an ‘ecoregion’, ‘province’ and ‘realm’ based on their spatial location in Spalding et al. (2007)’s spatial classification system for coastal and shelf waters. | | Ecoregion | All studies were assigned to an ‘ecoregion’, ‘province’ and ‘realm’ based on their spatial location in Spalding et al. (2007)’s spatial classification system for coastal and shelf waters. | | Unique study identifier | Unique identifiers for the lowest sampling unit in the dataset. In cases where there were data for different regions, reefs, islands/atolls, sites, reef zones, depths, and/or multiple disturbances within a publication or time-series, data from these publications were divided into separate ‘studies’. | | Publication/Dataset | Unique identifiers for the publication or dataset (generally the surname of the first author followed by the year of publication). | | Publication title | Title of the publication or dataset from which the data were sourced. | | Publication year | Year the publication from the which the data were sourced was published. | | Country/Territory | Name of the country or location from which the data came. | | Site latitude | Latitude of the study site from where the data came. | | Site longitude | Longitude of the study site from where the data came. | | Disturbance type | Classification of disturbance: Temperature stress, Cyclone/ severe storm, Runoff or Multiple. | | Disturbance.year | Year of the disturbance. | | Mean coral cover pre-disturbance | Pre-disturbance coral cover as extracted from the publication or dataset as the closest data point prior to disturbance. If there is an NA value in this column then there was no pre-disturbance data available and a measure of impact was not calculated. | | Mean coral cover post-disturbance | Post-disturbance coral cover as extracted from the publication or dataset as the closest data point prior to disturbance. If there is an NA value in this column then there was no pre-disturbance data available and a measure of impact was not calculated. | | Impact (lnRR) | Impact measure: the log response ratio of pre- to post-disturbance percentage coral cover. If there is an NA value in this column then there was no pre-disturbance data available and a measure of impact was not calculated. | | Time-averaged recovery rate | Recovery rate as percentage coral cover per year in the approximate 5-year time window following disturbance. See main Methods text in manuscript for more detail. If there is an NA value in this column then the available time-series following disturbance did not satisfy the criteria for inclusion in the calculation of recovery rate. | | Recovery shape | Recovery shape category: linear, accelerating, decelerating, logistic, flatline or null. If there is an NA value in this column then the available time-series following disturbance did not satisfy the criteria for inclusion in classification of recovery shape. | | Recovery completeness | Recovery completeness category: complete recovery – coral is observed to reach its pre-disturbance coral cover, signs of recovery – a positive trajectory but not reaching pre-disturbance cover in the time period examined, undetermined – no clear pattern in recovery, the null model was the top model, no recovery – the null model was the top model but the linear model had slope and standard error in slope near zero and further decline – the top model had a negative trend. If there is an NA value in this column then the available time-series following disturbance did not satisfy the criteria for inclusion in classification of recovery shape. | | Reference | Source for the data. | ## Sharing/Access information Data was derived from the following sources: **Appendix 1. Full list of references providing the data used in impact and recovery analyses supporting Table S1** Arceo, H. O., Quibilan, M. C., Aliño, P. M., Lim, G., & Licuanan, W. Y. (2001). Coral bleaching in Philippine reefs: Coincident evidences with mesoscale thermal anomalies. Bulletin of Marine Science, 69(2), 579-593. Aronson, R. B., Precht, W. F., Toscano, M. A., & Koltes, K. H. (2002). The 1998 bleaching event and its aftermath on a coral reef in Belize. Marine Biology, 141(3), 435-447. Aronson, R. B., Sebens, K. P., & Ebersole, J. P. (1994). Hurricane Hugo's impact on Salt River submarine canyon, St. Croix, US Virgin Islands. Proceedings of the colloquium on global aspects of coral reefs, Miami, 1993, 189-195. Bahr, K. D., Rodgers, K. S., & Jokiel, P. L. (2017). Impact of three bleaching events on the reef resiliency of Kāne'ohe Bay, Hawai'i. Frontiers in Marine Science, 4(DEC). Baird, A. H., Álvarez-Noriega, M., Cumbo, V. R., Connolly, S. R., Dornelas, M., & Madin, J. S. (2018). Effects of tropical storms on the demography of reef corals. Marine Ecology Progress Series, 606, 29-38. Barranco, L. M., Carriquiry, J. D., Rodríguez-Zaragoza, F. A., Cupul-Magaña, A. L., Villaescusa, J. A., & Calderón-Aguilera, L. E. (2016). Spatiotemporal variations of live coral cover in the Northern Mesoamerican reef system, Yucatan Peninsula, Mexico. Scientia Marina, 80(2), 143-150. Bastidas, C., Bone, D., Croquer, A., Debrot, D., Garcia, E., Humanes, A., . . . Rodríguez, S. (2012). Massive hard coral loss after a severe bleaching event in 2010 at Los Roques, Venezuela. Revista de Biologia Tropical, 60(SUPPL. 1), 29-37. Booth, D. J., & Beretta, G. A. (2002). Changes in a fish assemblage after a coral bleaching event. Marine Ecology Progress Series, 245, 205-212. Brandl, S. J., Emslie, M. J., & Ceccarelli, D. M. (2016). Habitat degradation increases functional originality in highly diverse coral reef fish assemblages. Ecosphere, 7(11). Brown, D., & Edmunds, P. J. (2013). Long-term changes in the population dynamics of the Caribbean hydrocoral Millepora spp. Journal of Experimental Marine Biology and Ecology, 441, 62-70. Brown, V. B., Davies, S. A., & Synnot, R. N. (1990). Long-term Monitoring of the Effects of Treated Sewage Effluent on the Intertidal Macroalgal Community Near Cape Schanck, Victoria, Australia. Botanica Marina, 33(1), 85-98. Bruckner, A. W., Coward, G., Bimson, K., & Rattanawongwan, T. (2017). Predation by feeding aggregations of Drupella spp. inhibits the recovery of reefs damaged by a mass bleaching event. Coral Reefs, 36(4), 1181-1187. Burt, J. A., Paparella, F., Al-Mansoori, N., Al-Mansoori, A., & Al-Jailani, H. (2019). Causes and consequences of the 2017 coral bleaching event in the southern Persian/Arabian Gulf. Coral Reefs. Bythell, J. (1997). Assessment of the impacts of hurricanes Marilyn and Luis and post-hurricane community dynamics at Buck Island Reef National Monument as part of the long-term coral reef monitoring program in the north-eastern Caribbean. Retrieved from Newcastle, United Kingdom: Coles, S. L., & Brown, E. K. (2007). Twenty-five years of change in coral coverage on a hurricane impacted reef in Hawai'i: The importance of recruitment. Coral Reefs, 26(3), 705-717. Connell, J. H., Hughes, T. P., Wallace, C. C., Tanner, J. E., Harms, K. E., & Kerr, A. M. (2004). A long‐term study of competition and diversity of corals. Ecological Monographs, 74(2), 179-210. Couch, C. S., Burns, J. H. R., Liu, G., Steward, K., Gutlay, T. N., Kenyon, J., . . . Kosaki, R. K. (2017). Mass coral bleaching due to unprecedented marine heatwave in Papahānaumokuākea Marine National Monument (Northwestern Hawaiian Islands). PLoS ONE, 12(9). Crabbe, M. J. C. (2014). Evidence of initial coral community recovery at Discovery Bay on Jamaica’s north coast. Revista de Biologia Tropical, 62, 137-140. Crosbie, A. J., Bridge, T. C., Jones, G., & Baird, A. H. (2019). Response of reef corals and fish at Osprey Reef to a thermal anomaly across a 30 m depth gradient. Marine Ecology Progress Series, 622, 93-102. Darling, E. S., McClanahan, T. R., & Côté, I. M. (2010). Combined effects of two stressors on Kenyan coral reefs are additive or antagonistic, not synergistic. Conservation Letters, 3(2), 122-130. De Bakker, D. M., Meesters, E. H., Bak, R. P. M., Nieuwland, G., & Van Duyl, F. C. (2016). Long-term Shifts in Coral Communities On Shallow to Deep Reef Slopes of Curaçao and Bonaire: Are There Any Winners? Frontiers in Marine Science, 3(247). Depczynski, M., Gilmour, J. P., Ridgway, T., Barnes, H., Heyward, A. J., Holmes, T. H., . . . Wilson, S. K. (2013). Bleaching, coral mortality and subsequent survivorship on a West Australian fringing reef. Coral Reefs, 32(1), 233-238. Diaz-Pulido, G., McCook, L. J., Dove, S., Berkelmans, R., Roff, G., Kline, D. I., . . . Hoegh-Guldberg, O. (2009). Doom and Boom on a Resilient Reef: Climate Change, Algal Overgrowth and Coral Recovery. PLoS ONE, 4(4). Dollar, S. J., & Tribble, G. W. (1993). Recurrent storm disturbance and recovery: a long-term study of coral communities in Hawaii. Coral Reefs, 12(3-4), 223-233. Donner, S. D., Kirata, T., & Vieux, C. (2010). Recovery from the 2004 coral bleaching event in the Gilbert Islands, Kiribati. Atoll Research Bulletin(587), 1-25. Edmunds, P. J. (2013). Decadal-scale changes in the community structure of coral reefs of St. John, US Virgin Islands. Marine Ecology Progress Series, 489, 107-123. Edmunds, P. J. (2018). Implications of high rates of sexual recruitment in driving rapid reef recovery in Mo’orea, French Polynesia. Scientific Reports, 8(1). Edmunds, P. J. (2019). Three decades of degradation lead to diminished impacts of severe hurricanes on Caribbean reefs. Ecology, 100(3). Edward, J. K. P., Mathews, G., Diraviya Raj, K., Laju, R. L., Selva Bharath, M., Arasamuthu, A., . . . Malleshappa, H. (2018). Coral mortality in the Gulf of Mannar, southeastern India, due to bleaching caused by elevated sea temperature in 2016. Current Science, 114(9), 1967-1972. Edwards, A. J., Clark, S., Zahir, H., Rajasuriya, A., Naseer, A., & Rubens, J. (2001). Coral bleaching and mortality on artificial and natural reefs in Maldives in 1998, sea surface temperature anomalies and initial recovery. Marine Pollution Bulletin, 42(1), 7-15. Emslie, M. J., Bray, P., Cheal, A. J., Johns, K. A., Osborne, K., Sinclair-Taylor, T., & Thompson, C. A. (2020). Decades of monitoring have informed the stewardship and ecological understanding of Australia's Great Barrier Reef. Biological Conservation, 252, 108854. Fenner, D. P. (1991). Effects of Hurricane Gilbert on coral reefs, fishes and sponges at Cozumel, Mexico. Bulletin of Marine Science, 48(3), 719-730. Fox, M. D., Carter, A. L., Edwards, C. B., Takeshita, Y., Johnson, M. D., Petrovic, V., . . . Smith, J. E. (2019). Limited coral mortality following acute thermal stress and widespread bleaching on Palmyra Atoll, central Pacific. Coral Reefs. García-Sais, J. R., Williams, S. M., & Amirrezvani, A. (2017). Mortality, recovery, and community shifts of scleractinian corals in Puerto Rico one decade after the 2005 regional bleaching event. PeerJ, 2017(7). Garpe, K. C., Yahya, S. A. S., Lindahl, U., & Öhman, M. C. (2006). Long-term effects of the 1998 coral bleaching event on reef fish assemblages. Marine Ecology Progress Series, 315, 237-247. Gilmour, J. P., Cook, K. L., Ryan, N. M., Puotinen, M. L., Green, R. H., Shedrawi, G., . . . Oades, D. (2019). The state of Western Australia’s coral reefs. Coral Reefs. Gilmour, J. P., Smith, L. D., Heyward, A. J., Baird, A. H., & Pratchett, M. S. (2013). Recovery of an isolated coral reef system following severe disturbance. Science, 340(6128), 69-71. Glynn, P. W. (1984). Widespread coral mortality and the 1982-1983 El Niño warming event. Environmental Conservation, 11(2), 133-146. Glynn, P. W., Enochs, I. C., Afflerbach, J. A., Brandtneris, V. W., & Serafy, J. E. (2014). Eastern Pacific reef fish responses to coral recovery following El Niño disturbances. Marine Ecology Progress Series, 495, 233-247. Gouezo, M., Golbuu, Y., Van Woesik, R., Rehm, L., Koshiba, S., & Doropoulos, C. (2015). Impact of two sequential super typhoons on coral reef communities in Palau. Marine Ecology Progress Series, 540, 73-85. Guest, J. R., Tun, K., Low, J., Vergés, A., Marzinelli, E. M., Campbell, A. H., . . . Steinberg, P. D. (2016). 27 years of benthic and coral community dynamics on turbid, highly urbanised reefs off Singapore. Scientific Reports, 6. Guillemot, N., Chabanet, P., & Le Pape, O. (2010). Cyclone effects on coral reef habitats in New Caledonia (South Pacific). Coral Reefs, 29(2), 445-453. Guzmán, H. M., & Cortés, J. (2001). Changes in reef community structure after fifteen years of natural disturbances in the Eastern Pacific (Costa Rica). Bulletin of Marine Science, 69(1), 133-149. Guzman, H. M., Cortes, J., Richmond, R. H., & Glynn, P. W. (1987). Effects of "El Nino - Southern oscillation' 1982/83 in the coral reefs at Isla del Cano, Costa Rica. Revista de Biologia Tropical, 35(2), 325-332. Haapkylä, J., Melbourne-Thomas, J., Flavell, M., & Willis, B. L. (2013). Disease outbreaks, bleaching and a cyclone drive changes in coral assemblages on an inshore reef of the Great Barrier Reef. Coral Reefs, 32(3), 815-824. Hagan, A., & Spencer, T. (2008). Reef resilience and change 1998–2007, Alphonse Atoll, Seychelles. Paper presented at the Proc 11th Int Coral Reef Symp. Harii, S., Hongo, C., Ishihara, M., Ide, Y., & Kayanne, H. (2014). Impacts of multiple disturbances on coral communities at Ishigaki Island, Okinawa, Japan, during a 15 year survey. Marine Ecology Progress Series, 509, 171-180. Harrison, H. B., Álvarez-Noriega, M., Baird, A. H., Heron, S. F., MacDonald, C., & Hughes, T. P. (2018). Back-to-back coral bleaching events on isolated atolls in the Coral Sea. Coral Reefs. Holbrook, S. J., Adam, T. C., Edmunds, P. J., Schmitt, R. J., Carpenter, R. C., Brooks, A. J., . . . Briggs, C. J. (2018). Recruitment Drives Spatial Variation in Recovery Rates of Resilient Coral Reefs. Scientific Reports, 8(1). Hongo, C., & Yamano, H. (2013). Species-Specific Responses of Corals to Bleaching Events on Anthropogenically Turbid Reefs on Okinawa Island, Japan, over a 15-year Period (1995-2009). PLoS ONE, 8(4). Huang, H., Yang, Y., Li, X., Yang, J., Lian, J., Lei, X., . . . Zhang, J. (2014). Benthic community changes following the 2010 Hainan flood: Implications for reef resilience. Marine Biology Research, 10(6), 601-611. Hughes, T. P. (1994). Catastrophes, phase shifts, and large-scale degradation of a Caribbean coral reef. Science, 265(5178), 1547-1551. Jokiel, P. L., Hunter, C. L., Taguchi, S., & Watarai, L. (1993). Ecological impact of a fresh-water "reef kill" in Kaneohe Bay, Oahu, Hawaii. Coral Reefs, 12(3-4), 177-184. Jones, A. M., & Berkelmans, R. (2014). Flood impacts in Keppel Bay, Southern Great Barrier Reef in the aftermath of cyclonic rainfall. PLoS ONE, 9(1). Jonker, M., Johns, K., & Osborne, K. (2008). Surveys of benthic reef communities using underwater digital photography and counts of juveniles. Long-term monitoring of the Great Barrier Reef Standard Operation Procedure Number 10. Retrieved from Townsville: Kuo, C. Y., Yuen, Y. S., Meng, P. J., Ho, P. H., Wang, J. T., Liu, P. J., . . . Chen, C. A. (2012). Recurrent Disturbances and the Degradation of Hard Coral Communities in Taiwan. PLoS ONE, 7(8). Lam, V. Y. Y., Chaloupka, M., Thompson, A., Doropoulos, C., & Mumby, P. J. (2018). Acute drivers influence recent inshore Great Barrier Reef dynamics. Proceedings of the Royal Society B: Biological Sciences, 285(1890). Lambo, A. L., & Ormond, R. F. G. (2006). Continued post-bleaching decline and changed benthic community of a Kenyan coral reef. Marine Pollution Bulletin, 52(12), 1617-1624. Lamy, T., Galzin, R., Kulbicki, M., Lison de Loma, T., & Claudet, J. (2016). Three decades of recurrent declines and recoveries in corals belie ongoing change in fish assemblages. Coral Reefs, 35(1), 293-302. Lamy, T., Legendre, P., Chancerelle, Y., Siu, G., & Claudet, J. (2015). Understanding the spatio-temporal response of coral reef fish communities to natural disturbances: Insights from beta-diversity decomposition. PLoS ONE, 10(9). Liddell, W. D., & Ohlhorst, S. L. (1992). Ten years of disturbance and change on a Jamaican fringing reef. Paper presented at the 7th Int. Coral Reef Symp. Lirman, D., Glynn, P. W., Baker, A. C., & Morales, G. E. L. (2001). Combined effects of three sequential storms on the huatulco coral reef tract, mexico. Bulletin of Marine Science, 69(1), 267-278. Lovell, E., & Sykes, H. Rapid recovery from bleaching events-Fiji Coral Reef Monitoring Network Assessment of hard coral cover from. Loya, Y., Sakai, K., Yamazato, K., Nakano, Y., Sambali, H., & Van Woesik, R. (2001). Coral bleaching: The winners and the losers. Ecology Letters, 4(2), 122-131. Lozano-Montes, H. M., Keesing, J. K., Grol, M. G., Haywood, M. D. E., Vanderklift, M. A., Babcock, R. C., & Bancroft, K. (2017). Limited effects of an extreme flood event on corals at Ningaloo Reef. Estuarine, Coastal and Shelf Science, 191, 234-238. Madin, J. S., Baird, A. H., Bridge, T. C. L., Connolly, S. R., Zawada, K. J. A., & Dornelas, M. (2018). Cumulative effects of cyclones and bleaching on coral cover and species richness at Lizard Island. Marine Ecology Progress Series, 604, 263-268. Magdaong, E. T., Fujii, M., Yamano, H., Licuanan, W. Y., Maypa, A., Campos, W. L., . . . Martinez, R. (2014). Long-term change in coral cover and the effectiveness of marine protected areas in the Philippines: A meta-analysis. Hydrobiologia, 733(1), 5-17. McField, M. (2000). Influence of disturbance on coral reef community structure in Belize. Paper presented at the Proc 9th Int Coral Reef Symp. Monaco, M. E., Friedlander, A. M., Caldow, C., Hile, S. D., Menza, C., & Boulon, R. H. (2009). Long-term monitoring of habitats and reef fish found inside and outside the U.S. Virgin Islands Coral Reef National Monument: A comparative assessment. Caribbean Journal of Science, 45(2-3), 338-347. Montefalcone, M., Morri, C., & Bianchi, C. N. (2018). Long-term change in bioconstruction potential of Maldivian coral reefs following extreme climate anomalies. Global Change Biology, 24(12), 5629-5641. Morgan, K. M., Perry, C. T., Johnson, J. A., & Smithers, S. G. (2017). Nearshore turbid-zone corals exhibit high bleaching tolerance on the Great Barrier Reef following the 2016 ocean warming event. Frontiers in Marine Science, 4. Obura, D., Gudka, M., Rabi, F. A., Gian, S. B., Bijoux, J., Freed, S., . . . Sola, E. (2017). Coral Reef Status Report for the Western Indian Ocean (2017). Paper presented at the Nairobi Convention. Obura, D., & Mangubhai, S. (2011). Coral mortality associated with thermal fluctuations in the Phoenix Islands, 2002-2005. Coral Reefs, 30(3), 607-619. Ostrander, G. K., Armstrong, K. M., Knobbe, E. T., Gerace, D., & Scully, E. P. (2000). Rapid transition the structure of a coral reef community: The effects of coral bleaching and physical disturbance. Proceedings of the National Academy of Sciences of the United States of America, 97(10), 5297-5302. Pereira, M. A. M., & Gonçalves, P. M. B. (2004). Effects of the 2000 southern Mozambique floods on a marginal coral community: The case at Xai-Xai. African Journal of Aquatic Science, 29(1), 113-116. Perry, C. T. (2003). Reef development at Inhaca Island, Mozambique: Coral communities and impacts of the 1999/2000 southern African floods. Ambio, 32(2), 134-139. Phongsuwan, N., Chankong, A., Yamarunpatthana, C., Chansang, H., Boonprakob, R., Petchkumnerd, P., . . . Bundit, O. A. (2013). Status and changing patterns on coral reefs in Thailand during the last two decades. Deep-Sea Research Part II: Topical Studies in Oceanography, 96, 19-24. Reyes-Bonilla, H., Carriquiry, J. D., Leyte-Morales, G. E., & Cupul-Magaña, A. L. (2002). Effects of the El Niño-Southern Oscillation and the anti-El Niño event (1997-1999) on coral reefs of the western coast of México. Coral Reefs, 21(4), 368-372. Ridgway, T., Inostroza, K., Synnot, L., Trapon, M., Twomey, L., & Westera, M. (2016). Temporal patterns of coral cover in the offshore Pilbara, Western Australia. Marine Biology, 163(9). Riegl, B. (2002). Effects of the 1996 and 1998 positive sea-surface temperature anomalies on corals, coral diseases and fish in the Arabian Gulf (Dubai, UAE). Marine Biology, 140(1), 29-40. Rioja-Nieto, R., Chiappa-Carrara, X., & Sheppard, C. (2012). Effects of hurricanes on the stability of reef-associated landscapes. Ciencias Marinas, 38(1), 47-55. Rogers, C. S., Gilnack, M., & Fitz Iii, H. C. (1983). Monitoring of coral reefs with linear transects: A study of storm damage. Journal of Experimental Marine Biology and Ecology, 66(3), 285-300. Rousseau, Y., Galzin, R., & Maréchal, J. P. (2010). Impact of hurricane Dean on coral reef benthic and fish structure of Martinique, French West Indies. Cybium, 34(3), 243-256. Russ, G. R., & Leahy, S. M. (2017). Rapid decline and decadal-scale recovery of corals and Chaetodon butterflyfish on Philippine coral reefs. Marine Biology, 164(1). Ruzicka, R. R., Colella, M. A., Porter, J. W., Morrison, J. M., Kidney, J. A., Brinkhuis, V., . . . Colee, J. (2013). Temporal changes in benthic assemblages on Florida Keys reefs 11 years after the 1997/1998 El Niño. Marine Ecology Progress Series, 489, 125-141. Sheppard, C. R. C. (1999). Coral decline and weather patterns over 20 years in the Chagos Archipelago, central Indian Ocean. Ambio, 28(6), 472-478. Shulman, M. J., & Robertson, D. R. (1996). Changes in the coral reefs of San Bias, Caribbean Panama: 1983 to 1990. Coral Reefs, 15(4), 231-236. Smith, T. B., Brandt, M. E., Calnan, J. M., Nemeth, R. S., Blondeau, J., Kadison, E., . . . Rothenberger, P. (2013). Convergent mortality responses of Caribbean coral species to seawater warming. Ecosphere, 4(7). Steneck, R. S., Arnold, S. N., Boenish, R., de León, R., Mumby, P. J., Rasher, D. B., & Wilson, M. W. (2019). Managing Recovery Resilience in Coral Reefs Against Climate-Induced Bleaching and Hurricanes: A 15 Year Case Study From Bonaire, Dutch Caribbean. Frontiers in Marine Science, 6(265). Stobart, B., Teleki, K., Buckley, R., Downing, N., & Callow, M. (2005). Coral recovery at Aldabra Atoll, Seychelles: Five years after the 1998 bleaching event. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 363(1826), 251-255. Torda, G., Sambrook, K., Cross, P., Sato, Y., Bourne, D. G., Lukoschek, V., . . . Willis, B. L. (2018). Decadal erosion of coral assemblages by multiple disturbances in the Palm Islands, central Great Barrier Reef. Scientific Reports, 8(1). Trapon, M. L., Pratchett, M. S., & Penin, L. (2011). Comparative effects of different disturbances in coral reef habitats in Moorea, French Polynesia. Journal of Marine Biology, 2011. Tsounis, G., & Edmunds, P. J. (2017). Three decades of coral reef community dynamics in St. John, USVI: A contrast of scleractinians and octocorals. Ecosphere, 8(1). Van Woesik, R., De Vantier, L. M., & Glazebrook, J. S. (1995). Effects of Cyclone "Joy' on nearshore coral communities of the Great Barrier Reef. Marine Ecology Progress Series, 128(1-3), 261-270. Van Woesik, R., Sakai, K., Ganase, A., & Loya, Y. (2011). Revisiting the winners and the losers a decade after coral bleaching. Marine Ecology Progress Series, 434, 67-76. Vercelloni, J., Kayal, M., Chancerelle, Y., & Planes, S. (2019). Exposure, vulnerability, and resiliency of French Polynesian coral reefs to environmental disturbances. Scientific Reports, 9(1). Walsh, W. J. (1983). Stability of a coral reef fish community following a catastrophic storm. Coral Reefs, 2(1), 49-63. Wilkinson, C. (2004). Status of coral reefs of the world: 2004 (Vol. 2). Queensland, Australia: Global Coral Reef Monitoring Network. Wilkinson, C. R., & Souter, D. (2008). Status of Caribbean coral reefs after bleaching and hurricanes in 2005. Wismer, S., Tebbett, S. B., Streit, R. P., & Bellwood, D. R. (2019). Spatial mismatch in fish and coral loss following 2016 mass coral bleaching. Science of the Total Environment, 650, 1487-1498. Woolsey, E., Bainbridge, S. J., Kingsford, M. J., & Byrne, M. (2012). Impacts of cyclone Hamish at One Tree Reef: Integrating environmental and benthic habitat data. Marine Biology, 159(4), 793-803. Aim: Understand the interplay between resistance and recovery on coral reefs, and investigate dependence on pre- and post-disturbance states, to inform generalisable reef resilience theory across large spatial and temporal scales. Location: Tropical coral reefs globally. Time period: 1966 to 2017. Major taxa studied: Scleratinian hard corals. Methods: We conducted a literature search to compile a global dataset of total coral cover before and after acute storms, temperature stress, and coastal runoff from flooding events. We used meta-regression to identify variables that explained significant variation in disturbance impact, including disturbance type, year, depth, and pre-disturbance coral cover. We further investigated the influence of these same variables, as well as post-disturbance coral cover and disturbance impact, on recovery rate. We examined the shape of recovery, assigning qualitatively distinct, ecologically relevant, population growth trajectories: linear, logistic, logarithmic (decelerating), and a second-order quadratic (accelerating). Results: We analysed 427 disturbance impacts and 117 recovery trajectories. Accelerating and logistic were the most common recovery shapes, underscoring non-linearities and recovery lags. A complex but meaningful relationship between the state of a reef pre- and post-disturbance, disturbance impact magnitude, and recovery rate was identified. Fastest recovery rates were predicted for intermediate to large disturbance impacts, but a decline in this rate was predicted when more than ~75% of pre-disturbance cover was lost. We identified a shifting baseline, with declines in both pre-and post-disturbance coral cover over the 50 year study period. Main conclusions: We breakdown the complexities of coral resilience, showing interplay between resistance and recovery, as well as dependence on both pre- and post-disturbance states, alongside documenting a chronic decline in these states. This has implications for predicting coral reef futures and implementing actions to enhance resilience. The dataset provides a summary of all studies included in the analysis and the key statistics obtained from the studies and used in the analyses for the manuscript entitled "Coral reef state influences resilience to acute climate-mediated disturbances" as published in Global Ecology and Biogeography. The dataset includes details about the publication, spatial identifiers (e.g. realm, province, ecoregion) unique site code, information on the disturbance type and timing, the pre-and post-disturbance coral cover, the 5-year annual recovery rate, the recovery shape and recovery completeness classifications. Please see details Methods in the journal article "Coral reef state influences resilience to acute climate-mediated disturbances" as published in Global Ecology and Biogeography.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2018Embargo end date: 10 Jan 2019Publisher:Dryad Pang, Rich; Van Breugel, Floris; Dickinson, Michael; Riffell, Jeffrey A.; Fairhall, Adrienne;doi: 10.5061/dryad.n0b8m
Flight trajectories of fruit flies and mosquitoes in a wind tunnel.This data file is a MySQL database file which must be uploaded to a MySQL database management system (DBMS) (e.g., via the MAMP installation: http://localhost:8888/MAMP/?language=English, as was used in the associated manuscript). Once you have installed a MySQL DBMS on your machine, make a new database called “wind_tunnel_db”. To populate this database using the data file, first download all of the data files and join them together using: cat wind_tunnel_db_* > wind_tunnel_db.sql Then run the following command to populate the wind_tunnel_db MySQL database with the result. /path/to/mysql -uroot -proot wind_tunnel_db < /path/to/wind_tunnel_db.sql replacing the paths and username/passwords as appropriate. It will take several minutes since it is a large file. The database contains several tables, which are mostly self explanatory. The key tables of interest are the “experiment” table, which lists the 4 experiments contained in this data set, the “timepoint” table, which contains the position, velocity, etc., of every fly/mosquito at every measured time point, and the “trajectory” table, which indicates which set of time points correspond to which individual trajectories. Other useful tables that have been pre-populated are the “crossing” table, which specifies trajectory segments corresponding to each plume crossing, and the “crossing_group” table, which groups sets of crossings together according to experiment and crossing identification criteria. The code that interacts with this database and recreates the figures in the associated manuscript is contained at https://github.com/rkp8000/wind_tunnel.wind_tunnel_db_aaPart 2wind_tunnel_db_abPart 3wind_tunnel_db_acPart 4wind_tunnel_db_adPart 5wind_tunnel_db_aePart 6wind_tunnel_db_afPart 7wind_tunnel_db_agPart 8wind_tunnel_db_ahPart 9wind_tunnel_db_aiInfotaxis databaseBase database for running infotaxis simulations. To see how to prepare and populate this database with simulated trajectory data, see the file _paper_auxiliary_code in the GitHub repository http://github.com/rkp8000/wind_tunnel.infotaxis_db.sql Natural decision-making often involves extended decision sequences in response to variable stimuli with complex structure. As an example, many animals follow odor plumes to locate food sources or mates, but turbulence breaks up the advected odor signal into intermittent filaments and puffs. This scenario provides an opportunity to ask how animals use sparse, instantaneous, and stochastic signal encounters to generate goal-oriented behavioral sequences. Here we examined the trajectories of flying fruit flies (Drosophila melanogaster) and mosquitoes (Aedes aegypti) navigating in controlled plumes of attractive odorants. While it is known that mean odor-triggered flight responses are dominated by upwind turns, individual responses are highly variable. We asked whether deviations from mean responses depended on specific features of odor encounters, and found that odor-triggered turns were slightly but significantly modulated by two features of odor encounters. First, encounters with higher concentrations triggered stronger upwind turns. Second, encounters occurring later in a sequence triggered weaker upwind turns. To contextualize the latter history dependence theoretically, we examined trajectories simulated from three normative tracking strategies. We found that neither a purely reactive strategy nor a strategy in which the tracker learned the plume centerline over time captured the observed history dependence. In contrast, “infotaxis”, in which flight decisions maximized expected information gain about source location, exhibited a history dependence aligned in sign with the data, though much larger in magnitude. These findings suggest that while true plume tracking is dominated by a reactive odor response it might also involve a history-dependent modulation of responses consistent with the accumulation of information about a source over multi-encounter timescales. This suggests that short-term memory processes modulating decision sequences may play a role in natural plume tracking.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Clinical Trial 2007 United StatesPublisher:nct Authors: Connie Weaver/Professor and Head of Department;Lifestyle choices,including diet,are conducive to healthy body weights in children. Dairy products and calcium supplementation have been associated with moderation of body weight and body fat. This study was designed to test the following hypotheses with overweight and obese adolescents consuming a controlled diet: - Dietary calcium supplementation as calcium carbonate or dairy calcium modulates energy balance in adolescents. - Increased calcium in the diet of adolescents will increase fecal fat excretion and thereby decrease fat absorption. - Calcium and dairy product supplementation will increase lipid oxidation resulting in an increase in energy expenditure. Subjects will consume a controlled diet containing 800 mg calcium for two three week periods. During one period they will also receive a frozen ice cream like product (smoothie) twice a day based on soy protein that contains no additional calcium. During the other period they will receive a similar product twice a day based on either dairy protein that contains 650 mg calcium or based on soy protein that contains 650 mg calcium as calcium carbonate
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2024Publisher:Mendeley Data Authors: Sun, Shouchen; Wang, Jiandong;Matlab program and data for the paper “An energy consumption rectification method based on Bayesian linear regression and heating degree-days". "simulation model.zip" is the heating house model in Trnsys simulation software. "Example1" and "Example2" is the Matlab program and data in this paper.
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You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2023Embargo end date: 31 Jan 2023Publisher:Edmond Opito, Emmanuel A.; Alanko, Timo; Kalbitzer, Urs; Nummelin, Matti; Omeja, Patrick; Valtonen, Anu; Chapman, Colin A.;doi: 10.17617/3.6j4za0
Data from: 30 Years Brings Changes to the Arthropod Community of Kibale National Park, Uganda by Opito, E.A., T. Alanko, U. Kalbitzer, M. Nummelin, P. Omeja, A. Valtonen, and Colin A. Chapman. 2023, Biotropica, Article DOI: 10.1111/btp.13206
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2023Embargo end date: 05 May 2023Publisher:Dryad Authors: Reidy, Jennifer; Sinnott, Emily; Thompson, Frank; O'Donnell, Lisa;We monitored golden-cheeked warbler territories in 10 plots within an urban preserve to determine abundance, delineate territories, and document breeding success. We determined environmental conditions across the study period to examine temporal and landscape effects. We then used these data to estimate adult survival and productivity and relate these vital rates to environmental conditions experienced during our study period. We used supported covariates to predict potential effects on this population 25 years into the future. These data and code are associated with the publication in Ecosphere entitled "Urban land cover and El Nino events negatively impact population viability of an endangered North American songbird." We performed an integrated population model to evaluate the effect of climate patterns and urban land cover on the viability of an endangered wood-warbler breeding in central Texas. We used territory monitroing data from 2011–2019 to predict viability of the population 25 years into the future. We assembled and conducted the analysis in R.
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Research data keyboard_double_arrow_right Dataset 2021Publisher:PANGAEA Funded by:ARC | Discovery Projects - Gran..., ARC | Discovery Projects - Gran..., ARC | Ocean acidification and r...ARC| Discovery Projects - Grant ID: DP170101722 ,ARC| Discovery Projects - Grant ID: DP150104263 ,ARC| Ocean acidification and rising sea temperature effect on fishConi, Ericka O C; Nagelkerken, Ivan; Ferreira, Camilo M; Connell, Sean D; Booth, David J;Poleward range extensions by warm-adapted sea urchins are switching temperate marine ecosystems from kelp-dominated to barren-dominated systems that favour the establishment of range-extending tropical fishes. Yet, such tropicalization may be buffered by ocean acidification, which reduces urchin grazing performance and the urchin barrens that tropical range-extending fishes prefer. Using ecosystems experiencing natural warming and acidification, we show that ocean acidification could buffer warming-facilitated tropicalization by reducing urchin populations (by 87%) and inhibiting the formation of barrens. This buffering effect of CO2 enrichment was observed at natural CO2 vents that are associated with a shift from a barren-dominated to a turf-dominated state, which we found is less favourable to tropical fishes. Together, these observations suggest that ocean acidification may buffer the tropicalization effect of ocean warming against urchin barren formation via multiple processes (fewer urchins and barrens) and consequently slow the increasing rate of tropicalization of temperate fish communities. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-07-26.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2023Embargo end date: 11 Oct 2023Publisher:Dryad Ding, Fangyu; Ge, Honghan; Ma, Tian; Wang, Qian; Hao, Mengmeng; Li, Hao; Zhang, Xiao-Ai; Maude, Richard James; Wang, Liping; Jiang, Dong; Fang, Li-Qun; Liu, Wei;# Data on: Projecting spatiotemporal dynamics of severe fever with thrombocytopenia syndrome in the mainland of China [https://doi.org/10.5061/dryad.vdncjsz1z](https://doi.org/10.5061/dryad.vdncjsz1z) This dataset is the data used in the paper of Global change biology entitled "Projecting spatiotemporal dynamics of severe fever with thrombocytopenia syndrome in the mainland of China". We use an integrated multi-model, multi-scenario framework to assess the impact of global climate change on SFTS disease in the mainland of China. ## Description of the data and file structure The predicted annual incidence of national SFTS cases with or without human population reduction under four RCPs under different climate change scenarios (RCP2.6, RCP4.5, RCP6.0, and RCP8.5) in the 2030s, 2050s, and 2080s. The value represents the annual incidence, and the unit is 105/year. The Dataset-1 file includes the predicted annual incidence of national SFTS cases with a fixed future human population under different climate change scenarios (RCP2.6, RCP4.5, RCP6.0, and RCP8.5) in the 2030s, 2050s, and 2080s. The Dataset-2 file includes the predicted annual incidence of national SFTS cases in the 2030s, 2050s, and 2080s with human population reduction (SSP2) under four RCPs. ## Sharing/Access information Data was derived from the following sources: * https://doi.org/10.1111/gcb.16969 This dataset is the data used in the paper of Global change biology entitled "Projecting spatiotemporal dynamics of severe fever with thrombocytopenia syndrome in the mainland of China". We use an integrated multi-model, multi-scenario framework to assess the impact of global climate change on SFTS disease in the mainland of China. The SFTS incidence in three time periods (2030-2039, 2050-2059, 2080-2089) is predicted to be increased as compared to the 2010s in the context of various RCPs. The projected spatiotemporal dynamics of SFTS will be heterogeneous across provinces. Notably, we predict possible outbreaks in Xinjiang and Yunnan in the future, where only sporadic cases have been reported previously. These findings highlight the need for population awareness of SFTS in endemic regions, and enhanced monitoring in potential risk areas. See the Materials and methods section in the original paper. The code used in the statistical analyses are present in the paper and/or the Supplementary Materials.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2020 United StatesPublisher:U.S. Geological Survey Authors: Marra, Kristen R;doi: 10.5066/p9on85ac
This data release contains the boundaries of assessment units and input data for the assessment of Oil and Gas Resources in the Mancos-Menefee Composite and Underlying Todilto Total Petroleum Systems of New Mexico and Colorado. The Assessment Unit is the fundamental unit used in the National Assessment Project for the assessment of undiscovered oil and gas resources. The Assessment Unit is defined within the context of the higher-level Total Petroleum System. The Assessment Unit is shown herein as a geographic boundary interpreted, defined, and mapped by the geologist responsible for the province and incorporates a set of known or postulated oil and (or) gas accumulations sharing similar geologic, geographic, and temporal properties within the Total Petroleum System, such as source rock, timing, migration pathways, trapping mechanism, and hydrocarbon type. The Assessment Unit boundary is defined geologically as the limits of the geologic elements that define the Assessment Unit, such as limits of reservoir rock, geologic structures, source rock, and seal lithologies. The only exceptions to this are Assessment Units that border the Federal-State water boundary. In these cases, the Federal-State water boundary forms part of the Assessment Unit boundary. Methodology of assessments are documented in USGS Data Series 547 for continuous assessments (https://pubs.usgs.gov/ds/547) and USGS DDS69-D, Chapter 21 for conventional assessments (https://pubs.usgs.gov/dds/dds-069/dds-069-d/REPORTS/69_D_CH_21.pdf). See supplemental information for a detailed list of files included this data release.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2021Embargo end date: 11 Oct 2021Publisher:Dryad Authors: Lempidakis, Emmanouil; Ross, Andrew; Börger, Luca; Shepard, Emily;Variable list for files: SW wind - Section table on Skomer (Standardised).csv / NW wind - Section table on Skomer (Standardised).csv / SE wind - Section table on Skomer (Standardised).csv /NE wind - Section table on Skomer (Standardised).csv and SW wind - Sections on Skokholm (Standardised).csv FID: Row ID (for use in ArcGIs) Count: Number of guillemots per section Area: Total area of each section () Density: Density of guillemots per section (number of birds/ Area) X_Centre: X coordinate of the central point of each section Y_Centre: Y coordinate of the central point of each section Sector: Section ID MeanUMedian; MeanUIQR, MeanUSkewness, MeanUCV: Median, interquartile range,skewness and coefficient of variation of mean wind speed per section HorizontalMedian;HorizontalIQR,HorizontalSkewness,HorizontalCV: Median, interquartile range,skewness and coefficient of variation of horizontal wind speed per section PMedian;PIQR,PSkewness,PCV: Median, interquartile range,skewness and coefficient of variation of preessure per section TKEMedian;TKEIQR,TKESkewness,TKECV: Median, interquartile range,skewness and coefficient of variation of turbulent kinetic energy per section TIMedian;TIIQR,TISkewness,TICV: Median, interquartile range,skewness and coefficient of variation of turbulence intensity per section U_2Median;lU_2IQR;U_2Skewness;U_2CV: Median, interquartile range,skewness and coefficient of variation of vertical wind speed per section EpsilonMedian;EpsilonIQR,EpsilonSkewness,EpsilonCV: Median, interquartile range,skewness and coefficient of variation of turbulent dissipation rate per section NutMedian;NutIQR,NutSkewness,NutCV: Median, interquartile range,skewness and coefficient of variation of kinematic viscosity per section GustsMedian;GustsIQR,GustsSkewness,GustsCV: Median, interquartile range,skewness and coefficient of variation of instataneous gusts per section MeanSectorSlope: Mean slope per section ColPresence: Binomial variable, indicating whether a section has birds or not. This variable varies with classification, based on either the count of birds or the density per section Variable list for file: Section table on Skomer - with Mean cliff orientation and Slope (NOT-Standardised).csv FID: Row ID (for use in ArcGIs) Count: Number of guillemots per section Area: Total area of each section () Density: Density of guillemots per section (number of birds/ Area) X_Centre: X coordinate of the central point of each section Y_Centre: Y coordinate of the central point of each section Sector: Section ID MeanSectorSlope: Mean slope per section MeanSectorAspectCircular: Mean cliff orientation per section ApsectClass: Factor indicating whether the mean cliff orientation is lee- or windward to the SW wind ColPresence: Binomial variable, indicating whether a section has birds or not. This variable varies with classification, based on either the count of birds or the density per section Variable list for file: SW wind - Sections on Skokholm to predict colonies using cliff orientation and slope model from Skomer (NON - Standardised).csv FID: Row ID (for use in ArcGIs) Count: Number of guillemots per section Area: Total area of each section () Density: Density of guillemots per section (number of birds/ Area) Sector: Section ID MeanSectorSlope: Mean slope per section MeanSectorAspectCircular: Mean cliff orientation per section Wind is fundamentally related to shelter and flight performance: two factors that are critical for birds at their nest sites. Despite this, airflows have never been fully integrated into models of breeding habitat selection, even for well-studied seabirds. Here we use computational fluid dynamics to provide the first assessment of whether flow characteristics (including wind speed and turbulence) predict the distribution of seabird colonies, taking common guillemots (Uria aalge) breeding on Skomer island as our study system. This demonstrates that occupancy is driven by the need to shelter from both wind and rain/ wave action, rather than airflow characteristics alone. Models of airflows and cliff orientation both performed well in predicting high quality habitat in our study site, identifying 80% of colonies and 93% of avoided sites, as well as 73% of the largest colonies on a neighbouring island. This suggests generality in the mechanisms driving breeding distributions, and provides an approach for identifying habitat for seabird reintroductions considering current and projected wind speeds and directions. Methods detailed in manuscript: https://doi.org/10.1111/ecog.05733.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2023Embargo end date: 24 Sep 2023Publisher:Dryad Cresswell, Anna; Renton, Michael; Langlois, Timothy; Thomson, Damian; Lynn, Jasmine; Claudet, Joachim;# Coral reef state influences resilience to acute climate-mediated disturbances\_Table S1 [https://doi.org/10.5061/dryad.rfj6q57gz](https://doi.org/10.5061/dryad.rfj6q57gz) The dataset provides a summary of all publications included in the analysis for this study and the key statistics obtained from the studies and used in the analyses. The dataset includes details about the publication, spatial identifiers (e.g. realm, province, ecoregion) unique site code, information on the disturbance type and timing, the pre-and post-disturbance coral cover, the 5-year annual recovery rate, the recovery shape and recovery completeness classifications. Please see details Methods in the journal article "Coral reef state influences resilience to acute climate-mediated disturbances" as published in Global Ecology and Biogeography. ## Description of the data and file structure Each column provides the following information: | Column | Detail | | ------ | ------ | | Realm | All studies were assigned to an ‘ecoregion’, ‘province’ and ‘realm’ based on their spatial location in Spalding et al. (2007)’s spatial classification system for coastal and shelf waters. | | Province | All studies were assigned to an ‘ecoregion’, ‘province’ and ‘realm’ based on their spatial location in Spalding et al. (2007)’s spatial classification system for coastal and shelf waters. | | Ecoregion | All studies were assigned to an ‘ecoregion’, ‘province’ and ‘realm’ based on their spatial location in Spalding et al. (2007)’s spatial classification system for coastal and shelf waters. | | Unique study identifier | Unique identifiers for the lowest sampling unit in the dataset. In cases where there were data for different regions, reefs, islands/atolls, sites, reef zones, depths, and/or multiple disturbances within a publication or time-series, data from these publications were divided into separate ‘studies’. | | Publication/Dataset | Unique identifiers for the publication or dataset (generally the surname of the first author followed by the year of publication). | | Publication title | Title of the publication or dataset from which the data were sourced. | | Publication year | Year the publication from the which the data were sourced was published. | | Country/Territory | Name of the country or location from which the data came. | | Site latitude | Latitude of the study site from where the data came. | | Site longitude | Longitude of the study site from where the data came. | | Disturbance type | Classification of disturbance: Temperature stress, Cyclone/ severe storm, Runoff or Multiple. | | Disturbance.year | Year of the disturbance. | | Mean coral cover pre-disturbance | Pre-disturbance coral cover as extracted from the publication or dataset as the closest data point prior to disturbance. If there is an NA value in this column then there was no pre-disturbance data available and a measure of impact was not calculated. | | Mean coral cover post-disturbance | Post-disturbance coral cover as extracted from the publication or dataset as the closest data point prior to disturbance. If there is an NA value in this column then there was no pre-disturbance data available and a measure of impact was not calculated. | | Impact (lnRR) | Impact measure: the log response ratio of pre- to post-disturbance percentage coral cover. If there is an NA value in this column then there was no pre-disturbance data available and a measure of impact was not calculated. | | Time-averaged recovery rate | Recovery rate as percentage coral cover per year in the approximate 5-year time window following disturbance. See main Methods text in manuscript for more detail. If there is an NA value in this column then the available time-series following disturbance did not satisfy the criteria for inclusion in the calculation of recovery rate. | | Recovery shape | Recovery shape category: linear, accelerating, decelerating, logistic, flatline or null. If there is an NA value in this column then the available time-series following disturbance did not satisfy the criteria for inclusion in classification of recovery shape. | | Recovery completeness | Recovery completeness category: complete recovery – coral is observed to reach its pre-disturbance coral cover, signs of recovery – a positive trajectory but not reaching pre-disturbance cover in the time period examined, undetermined – no clear pattern in recovery, the null model was the top model, no recovery – the null model was the top model but the linear model had slope and standard error in slope near zero and further decline – the top model had a negative trend. If there is an NA value in this column then the available time-series following disturbance did not satisfy the criteria for inclusion in classification of recovery shape. | | Reference | Source for the data. | ## Sharing/Access information Data was derived from the following sources: **Appendix 1. Full list of references providing the data used in impact and recovery analyses supporting Table S1** Arceo, H. O., Quibilan, M. C., Aliño, P. M., Lim, G., & Licuanan, W. Y. (2001). Coral bleaching in Philippine reefs: Coincident evidences with mesoscale thermal anomalies. Bulletin of Marine Science, 69(2), 579-593. Aronson, R. B., Precht, W. F., Toscano, M. A., & Koltes, K. H. (2002). The 1998 bleaching event and its aftermath on a coral reef in Belize. Marine Biology, 141(3), 435-447. Aronson, R. B., Sebens, K. P., & Ebersole, J. P. (1994). Hurricane Hugo's impact on Salt River submarine canyon, St. Croix, US Virgin Islands. Proceedings of the colloquium on global aspects of coral reefs, Miami, 1993, 189-195. Bahr, K. D., Rodgers, K. S., & Jokiel, P. L. (2017). Impact of three bleaching events on the reef resiliency of Kāne'ohe Bay, Hawai'i. Frontiers in Marine Science, 4(DEC). Baird, A. H., Álvarez-Noriega, M., Cumbo, V. R., Connolly, S. R., Dornelas, M., & Madin, J. S. (2018). Effects of tropical storms on the demography of reef corals. Marine Ecology Progress Series, 606, 29-38. Barranco, L. M., Carriquiry, J. D., Rodríguez-Zaragoza, F. A., Cupul-Magaña, A. L., Villaescusa, J. A., & Calderón-Aguilera, L. E. (2016). Spatiotemporal variations of live coral cover in the Northern Mesoamerican reef system, Yucatan Peninsula, Mexico. Scientia Marina, 80(2), 143-150. Bastidas, C., Bone, D., Croquer, A., Debrot, D., Garcia, E., Humanes, A., . . . Rodríguez, S. (2012). Massive hard coral loss after a severe bleaching event in 2010 at Los Roques, Venezuela. Revista de Biologia Tropical, 60(SUPPL. 1), 29-37. Booth, D. J., & Beretta, G. A. (2002). Changes in a fish assemblage after a coral bleaching event. Marine Ecology Progress Series, 245, 205-212. Brandl, S. J., Emslie, M. J., & Ceccarelli, D. M. (2016). Habitat degradation increases functional originality in highly diverse coral reef fish assemblages. Ecosphere, 7(11). Brown, D., & Edmunds, P. J. (2013). Long-term changes in the population dynamics of the Caribbean hydrocoral Millepora spp. Journal of Experimental Marine Biology and Ecology, 441, 62-70. Brown, V. B., Davies, S. A., & Synnot, R. N. (1990). Long-term Monitoring of the Effects of Treated Sewage Effluent on the Intertidal Macroalgal Community Near Cape Schanck, Victoria, Australia. Botanica Marina, 33(1), 85-98. Bruckner, A. W., Coward, G., Bimson, K., & Rattanawongwan, T. (2017). Predation by feeding aggregations of Drupella spp. inhibits the recovery of reefs damaged by a mass bleaching event. Coral Reefs, 36(4), 1181-1187. Burt, J. A., Paparella, F., Al-Mansoori, N., Al-Mansoori, A., & Al-Jailani, H. (2019). Causes and consequences of the 2017 coral bleaching event in the southern Persian/Arabian Gulf. Coral Reefs. Bythell, J. (1997). Assessment of the impacts of hurricanes Marilyn and Luis and post-hurricane community dynamics at Buck Island Reef National Monument as part of the long-term coral reef monitoring program in the north-eastern Caribbean. Retrieved from Newcastle, United Kingdom: Coles, S. L., & Brown, E. K. (2007). Twenty-five years of change in coral coverage on a hurricane impacted reef in Hawai'i: The importance of recruitment. Coral Reefs, 26(3), 705-717. Connell, J. H., Hughes, T. P., Wallace, C. C., Tanner, J. E., Harms, K. E., & Kerr, A. M. (2004). A long‐term study of competition and diversity of corals. Ecological Monographs, 74(2), 179-210. Couch, C. S., Burns, J. H. R., Liu, G., Steward, K., Gutlay, T. N., Kenyon, J., . . . Kosaki, R. K. (2017). 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P., Ridgway, T., Barnes, H., Heyward, A. J., Holmes, T. H., . . . Wilson, S. K. (2013). Bleaching, coral mortality and subsequent survivorship on a West Australian fringing reef. Coral Reefs, 32(1), 233-238. Diaz-Pulido, G., McCook, L. J., Dove, S., Berkelmans, R., Roff, G., Kline, D. I., . . . Hoegh-Guldberg, O. (2009). Doom and Boom on a Resilient Reef: Climate Change, Algal Overgrowth and Coral Recovery. PLoS ONE, 4(4). Dollar, S. J., & Tribble, G. W. (1993). Recurrent storm disturbance and recovery: a long-term study of coral communities in Hawaii. Coral Reefs, 12(3-4), 223-233. Donner, S. D., Kirata, T., & Vieux, C. (2010). Recovery from the 2004 coral bleaching event in the Gilbert Islands, Kiribati. Atoll Research Bulletin(587), 1-25. Edmunds, P. J. (2013). Decadal-scale changes in the community structure of coral reefs of St. John, US Virgin Islands. Marine Ecology Progress Series, 489, 107-123. Edmunds, P. J. (2018). 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M., Puotinen, M. L., Green, R. H., Shedrawi, G., . . . Oades, D. (2019). The state of Western Australia’s coral reefs. Coral Reefs. Gilmour, J. P., Smith, L. D., Heyward, A. J., Baird, A. H., & Pratchett, M. S. (2013). Recovery of an isolated coral reef system following severe disturbance. Science, 340(6128), 69-71. Glynn, P. W. (1984). Widespread coral mortality and the 1982-1983 El Niño warming event. Environmental Conservation, 11(2), 133-146. Glynn, P. W., Enochs, I. C., Afflerbach, J. A., Brandtneris, V. W., & Serafy, J. E. (2014). Eastern Pacific reef fish responses to coral recovery following El Niño disturbances. Marine Ecology Progress Series, 495, 233-247. Gouezo, M., Golbuu, Y., Van Woesik, R., Rehm, L., Koshiba, S., & Doropoulos, C. (2015). Impact of two sequential super typhoons on coral reef communities in Palau. Marine Ecology Progress Series, 540, 73-85. Guest, J. R., Tun, K., Low, J., Vergés, A., Marzinelli, E. M., Campbell, A. H., . . . Steinberg, P. D. (2016). 27 years of benthic and coral community dynamics on turbid, highly urbanised reefs off Singapore. Scientific Reports, 6. Guillemot, N., Chabanet, P., & Le Pape, O. (2010). Cyclone effects on coral reef habitats in New Caledonia (South Pacific). Coral Reefs, 29(2), 445-453. Guzmán, H. M., & Cortés, J. (2001). Changes in reef community structure after fifteen years of natural disturbances in the Eastern Pacific (Costa Rica). Bulletin of Marine Science, 69(1), 133-149. Guzman, H. M., Cortes, J., Richmond, R. H., & Glynn, P. W. (1987). Effects of "El Nino - Southern oscillation' 1982/83 in the coral reefs at Isla del Cano, Costa Rica. Revista de Biologia Tropical, 35(2), 325-332. Haapkylä, J., Melbourne-Thomas, J., Flavell, M., & Willis, B. L. (2013). Disease outbreaks, bleaching and a cyclone drive changes in coral assemblages on an inshore reef of the Great Barrier Reef. Coral Reefs, 32(3), 815-824. Hagan, A., & Spencer, T. (2008). Reef resilience and change 1998–2007, Alphonse Atoll, Seychelles. Paper presented at the Proc 11th Int Coral Reef Symp. Harii, S., Hongo, C., Ishihara, M., Ide, Y., & Kayanne, H. (2014). Impacts of multiple disturbances on coral communities at Ishigaki Island, Okinawa, Japan, during a 15 year survey. Marine Ecology Progress Series, 509, 171-180. Harrison, H. B., Álvarez-Noriega, M., Baird, A. H., Heron, S. F., MacDonald, C., & Hughes, T. P. (2018). Back-to-back coral bleaching events on isolated atolls in the Coral Sea. Coral Reefs. Holbrook, S. J., Adam, T. C., Edmunds, P. J., Schmitt, R. J., Carpenter, R. C., Brooks, A. J., . . . Briggs, C. J. (2018). Recruitment Drives Spatial Variation in Recovery Rates of Resilient Coral Reefs. Scientific Reports, 8(1). Hongo, C., & Yamano, H. (2013). Species-Specific Responses of Corals to Bleaching Events on Anthropogenically Turbid Reefs on Okinawa Island, Japan, over a 15-year Period (1995-2009). PLoS ONE, 8(4). Huang, H., Yang, Y., Li, X., Yang, J., Lian, J., Lei, X., . . . Zhang, J. (2014). Benthic community changes following the 2010 Hainan flood: Implications for reef resilience. Marine Biology Research, 10(6), 601-611. Hughes, T. P. (1994). Catastrophes, phase shifts, and large-scale degradation of a Caribbean coral reef. Science, 265(5178), 1547-1551. Jokiel, P. L., Hunter, C. L., Taguchi, S., & Watarai, L. (1993). Ecological impact of a fresh-water "reef kill" in Kaneohe Bay, Oahu, Hawaii. Coral Reefs, 12(3-4), 177-184. Jones, A. M., & Berkelmans, R. (2014). Flood impacts in Keppel Bay, Southern Great Barrier Reef in the aftermath of cyclonic rainfall. PLoS ONE, 9(1). Jonker, M., Johns, K., & Osborne, K. (2008). Surveys of benthic reef communities using underwater digital photography and counts of juveniles. Long-term monitoring of the Great Barrier Reef Standard Operation Procedure Number 10. Retrieved from Townsville: Kuo, C. Y., Yuen, Y. S., Meng, P. J., Ho, P. H., Wang, J. T., Liu, P. J., . . . Chen, C. A. (2012). Recurrent Disturbances and the Degradation of Hard Coral Communities in Taiwan. PLoS ONE, 7(8). Lam, V. Y. Y., Chaloupka, M., Thompson, A., Doropoulos, C., & Mumby, P. J. (2018). Acute drivers influence recent inshore Great Barrier Reef dynamics. Proceedings of the Royal Society B: Biological Sciences, 285(1890). Lambo, A. L., & Ormond, R. F. G. (2006). Continued post-bleaching decline and changed benthic community of a Kenyan coral reef. Marine Pollution Bulletin, 52(12), 1617-1624. Lamy, T., Galzin, R., Kulbicki, M., Lison de Loma, T., & Claudet, J. (2016). Three decades of recurrent declines and recoveries in corals belie ongoing change in fish assemblages. Coral Reefs, 35(1), 293-302. Lamy, T., Legendre, P., Chancerelle, Y., Siu, G., & Claudet, J. (2015). Understanding the spatio-temporal response of coral reef fish communities to natural disturbances: Insights from beta-diversity decomposition. PLoS ONE, 10(9). Liddell, W. D., & Ohlhorst, S. L. (1992). Ten years of disturbance and change on a Jamaican fringing reef. Paper presented at the 7th Int. Coral Reef Symp. Lirman, D., Glynn, P. W., Baker, A. C., & Morales, G. E. L. (2001). Combined effects of three sequential storms on the huatulco coral reef tract, mexico. Bulletin of Marine Science, 69(1), 267-278. Lovell, E., & Sykes, H. Rapid recovery from bleaching events-Fiji Coral Reef Monitoring Network Assessment of hard coral cover from. Loya, Y., Sakai, K., Yamazato, K., Nakano, Y., Sambali, H., & Van Woesik, R. (2001). Coral bleaching: The winners and the losers. Ecology Letters, 4(2), 122-131. Lozano-Montes, H. M., Keesing, J. K., Grol, M. G., Haywood, M. D. E., Vanderklift, M. A., Babcock, R. C., & Bancroft, K. (2017). Limited effects of an extreme flood event on corals at Ningaloo Reef. Estuarine, Coastal and Shelf Science, 191, 234-238. Madin, J. S., Baird, A. H., Bridge, T. C. L., Connolly, S. R., Zawada, K. J. A., & Dornelas, M. (2018). Cumulative effects of cyclones and bleaching on coral cover and species richness at Lizard Island. Marine Ecology Progress Series, 604, 263-268. Magdaong, E. T., Fujii, M., Yamano, H., Licuanan, W. Y., Maypa, A., Campos, W. L., . . . Martinez, R. (2014). Long-term change in coral cover and the effectiveness of marine protected areas in the Philippines: A meta-analysis. Hydrobiologia, 733(1), 5-17. McField, M. (2000). Influence of disturbance on coral reef community structure in Belize. Paper presented at the Proc 9th Int Coral Reef Symp. Monaco, M. E., Friedlander, A. M., Caldow, C., Hile, S. D., Menza, C., & Boulon, R. H. (2009). Long-term monitoring of habitats and reef fish found inside and outside the U.S. Virgin Islands Coral Reef National Monument: A comparative assessment. Caribbean Journal of Science, 45(2-3), 338-347. Montefalcone, M., Morri, C., & Bianchi, C. N. (2018). Long-term change in bioconstruction potential of Maldivian coral reefs following extreme climate anomalies. Global Change Biology, 24(12), 5629-5641. Morgan, K. M., Perry, C. T., Johnson, J. A., & Smithers, S. G. (2017). Nearshore turbid-zone corals exhibit high bleaching tolerance on the Great Barrier Reef following the 2016 ocean warming event. Frontiers in Marine Science, 4. Obura, D., Gudka, M., Rabi, F. A., Gian, S. B., Bijoux, J., Freed, S., . . . Sola, E. (2017). Coral Reef Status Report for the Western Indian Ocean (2017). Paper presented at the Nairobi Convention. Obura, D., & Mangubhai, S. (2011). Coral mortality associated with thermal fluctuations in the Phoenix Islands, 2002-2005. Coral Reefs, 30(3), 607-619. Ostrander, G. K., Armstrong, K. M., Knobbe, E. T., Gerace, D., & Scully, E. P. (2000). Rapid transition the structure of a coral reef community: The effects of coral bleaching and physical disturbance. Proceedings of the National Academy of Sciences of the United States of America, 97(10), 5297-5302. Pereira, M. A. M., & Gonçalves, P. M. B. (2004). Effects of the 2000 southern Mozambique floods on a marginal coral community: The case at Xai-Xai. African Journal of Aquatic Science, 29(1), 113-116. Perry, C. T. (2003). Reef development at Inhaca Island, Mozambique: Coral communities and impacts of the 1999/2000 southern African floods. Ambio, 32(2), 134-139. Phongsuwan, N., Chankong, A., Yamarunpatthana, C., Chansang, H., Boonprakob, R., Petchkumnerd, P., . . . Bundit, O. A. (2013). Status and changing patterns on coral reefs in Thailand during the last two decades. Deep-Sea Research Part II: Topical Studies in Oceanography, 96, 19-24. Reyes-Bonilla, H., Carriquiry, J. D., Leyte-Morales, G. E., & Cupul-Magaña, A. L. (2002). Effects of the El Niño-Southern Oscillation and the anti-El Niño event (1997-1999) on coral reefs of the western coast of México. Coral Reefs, 21(4), 368-372. Ridgway, T., Inostroza, K., Synnot, L., Trapon, M., Twomey, L., & Westera, M. (2016). Temporal patterns of coral cover in the offshore Pilbara, Western Australia. Marine Biology, 163(9). Riegl, B. (2002). Effects of the 1996 and 1998 positive sea-surface temperature anomalies on corals, coral diseases and fish in the Arabian Gulf (Dubai, UAE). Marine Biology, 140(1), 29-40. Rioja-Nieto, R., Chiappa-Carrara, X., & Sheppard, C. (2012). Effects of hurricanes on the stability of reef-associated landscapes. Ciencias Marinas, 38(1), 47-55. Rogers, C. S., Gilnack, M., & Fitz Iii, H. C. (1983). Monitoring of coral reefs with linear transects: A study of storm damage. Journal of Experimental Marine Biology and Ecology, 66(3), 285-300. Rousseau, Y., Galzin, R., & Maréchal, J. P. (2010). Impact of hurricane Dean on coral reef benthic and fish structure of Martinique, French West Indies. Cybium, 34(3), 243-256. Russ, G. R., & Leahy, S. M. (2017). Rapid decline and decadal-scale recovery of corals and Chaetodon butterflyfish on Philippine coral reefs. Marine Biology, 164(1). Ruzicka, R. R., Colella, M. A., Porter, J. W., Morrison, J. M., Kidney, J. A., Brinkhuis, V., . . . Colee, J. (2013). Temporal changes in benthic assemblages on Florida Keys reefs 11 years after the 1997/1998 El Niño. Marine Ecology Progress Series, 489, 125-141. Sheppard, C. R. C. (1999). Coral decline and weather patterns over 20 years in the Chagos Archipelago, central Indian Ocean. Ambio, 28(6), 472-478. Shulman, M. J., & Robertson, D. R. (1996). Changes in the coral reefs of San Bias, Caribbean Panama: 1983 to 1990. Coral Reefs, 15(4), 231-236. Smith, T. B., Brandt, M. E., Calnan, J. M., Nemeth, R. S., Blondeau, J., Kadison, E., . . . Rothenberger, P. (2013). Convergent mortality responses of Caribbean coral species to seawater warming. Ecosphere, 4(7). Steneck, R. S., Arnold, S. N., Boenish, R., de León, R., Mumby, P. J., Rasher, D. B., & Wilson, M. W. (2019). Managing Recovery Resilience in Coral Reefs Against Climate-Induced Bleaching and Hurricanes: A 15 Year Case Study From Bonaire, Dutch Caribbean. Frontiers in Marine Science, 6(265). Stobart, B., Teleki, K., Buckley, R., Downing, N., & Callow, M. (2005). Coral recovery at Aldabra Atoll, Seychelles: Five years after the 1998 bleaching event. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences, 363(1826), 251-255. Torda, G., Sambrook, K., Cross, P., Sato, Y., Bourne, D. G., Lukoschek, V., . . . Willis, B. L. (2018). Decadal erosion of coral assemblages by multiple disturbances in the Palm Islands, central Great Barrier Reef. Scientific Reports, 8(1). Trapon, M. L., Pratchett, M. S., & Penin, L. (2011). Comparative effects of different disturbances in coral reef habitats in Moorea, French Polynesia. Journal of Marine Biology, 2011. Tsounis, G., & Edmunds, P. J. (2017). Three decades of coral reef community dynamics in St. John, USVI: A contrast of scleractinians and octocorals. Ecosphere, 8(1). Van Woesik, R., De Vantier, L. M., & Glazebrook, J. S. (1995). Effects of Cyclone "Joy' on nearshore coral communities of the Great Barrier Reef. Marine Ecology Progress Series, 128(1-3), 261-270. Van Woesik, R., Sakai, K., Ganase, A., & Loya, Y. (2011). Revisiting the winners and the losers a decade after coral bleaching. Marine Ecology Progress Series, 434, 67-76. Vercelloni, J., Kayal, M., Chancerelle, Y., & Planes, S. (2019). Exposure, vulnerability, and resiliency of French Polynesian coral reefs to environmental disturbances. Scientific Reports, 9(1). Walsh, W. J. (1983). Stability of a coral reef fish community following a catastrophic storm. Coral Reefs, 2(1), 49-63. Wilkinson, C. (2004). Status of coral reefs of the world: 2004 (Vol. 2). Queensland, Australia: Global Coral Reef Monitoring Network. Wilkinson, C. R., & Souter, D. (2008). Status of Caribbean coral reefs after bleaching and hurricanes in 2005. Wismer, S., Tebbett, S. B., Streit, R. P., & Bellwood, D. R. (2019). Spatial mismatch in fish and coral loss following 2016 mass coral bleaching. Science of the Total Environment, 650, 1487-1498. Woolsey, E., Bainbridge, S. J., Kingsford, M. J., & Byrne, M. (2012). Impacts of cyclone Hamish at One Tree Reef: Integrating environmental and benthic habitat data. Marine Biology, 159(4), 793-803. Aim: Understand the interplay between resistance and recovery on coral reefs, and investigate dependence on pre- and post-disturbance states, to inform generalisable reef resilience theory across large spatial and temporal scales. Location: Tropical coral reefs globally. Time period: 1966 to 2017. Major taxa studied: Scleratinian hard corals. Methods: We conducted a literature search to compile a global dataset of total coral cover before and after acute storms, temperature stress, and coastal runoff from flooding events. We used meta-regression to identify variables that explained significant variation in disturbance impact, including disturbance type, year, depth, and pre-disturbance coral cover. We further investigated the influence of these same variables, as well as post-disturbance coral cover and disturbance impact, on recovery rate. We examined the shape of recovery, assigning qualitatively distinct, ecologically relevant, population growth trajectories: linear, logistic, logarithmic (decelerating), and a second-order quadratic (accelerating). Results: We analysed 427 disturbance impacts and 117 recovery trajectories. Accelerating and logistic were the most common recovery shapes, underscoring non-linearities and recovery lags. A complex but meaningful relationship between the state of a reef pre- and post-disturbance, disturbance impact magnitude, and recovery rate was identified. Fastest recovery rates were predicted for intermediate to large disturbance impacts, but a decline in this rate was predicted when more than ~75% of pre-disturbance cover was lost. We identified a shifting baseline, with declines in both pre-and post-disturbance coral cover over the 50 year study period. Main conclusions: We breakdown the complexities of coral resilience, showing interplay between resistance and recovery, as well as dependence on both pre- and post-disturbance states, alongside documenting a chronic decline in these states. This has implications for predicting coral reef futures and implementing actions to enhance resilience. The dataset provides a summary of all studies included in the analysis and the key statistics obtained from the studies and used in the analyses for the manuscript entitled "Coral reef state influences resilience to acute climate-mediated disturbances" as published in Global Ecology and Biogeography. The dataset includes details about the publication, spatial identifiers (e.g. realm, province, ecoregion) unique site code, information on the disturbance type and timing, the pre-and post-disturbance coral cover, the 5-year annual recovery rate, the recovery shape and recovery completeness classifications. Please see details Methods in the journal article "Coral reef state influences resilience to acute climate-mediated disturbances" as published in Global Ecology and Biogeography.
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For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2018Embargo end date: 10 Jan 2019Publisher:Dryad Pang, Rich; Van Breugel, Floris; Dickinson, Michael; Riffell, Jeffrey A.; Fairhall, Adrienne;doi: 10.5061/dryad.n0b8m
Flight trajectories of fruit flies and mosquitoes in a wind tunnel.This data file is a MySQL database file which must be uploaded to a MySQL database management system (DBMS) (e.g., via the MAMP installation: http://localhost:8888/MAMP/?language=English, as was used in the associated manuscript). Once you have installed a MySQL DBMS on your machine, make a new database called “wind_tunnel_db”. To populate this database using the data file, first download all of the data files and join them together using: cat wind_tunnel_db_* > wind_tunnel_db.sql Then run the following command to populate the wind_tunnel_db MySQL database with the result. /path/to/mysql -uroot -proot wind_tunnel_db < /path/to/wind_tunnel_db.sql replacing the paths and username/passwords as appropriate. It will take several minutes since it is a large file. The database contains several tables, which are mostly self explanatory. The key tables of interest are the “experiment” table, which lists the 4 experiments contained in this data set, the “timepoint” table, which contains the position, velocity, etc., of every fly/mosquito at every measured time point, and the “trajectory” table, which indicates which set of time points correspond to which individual trajectories. Other useful tables that have been pre-populated are the “crossing” table, which specifies trajectory segments corresponding to each plume crossing, and the “crossing_group” table, which groups sets of crossings together according to experiment and crossing identification criteria. The code that interacts with this database and recreates the figures in the associated manuscript is contained at https://github.com/rkp8000/wind_tunnel.wind_tunnel_db_aaPart 2wind_tunnel_db_abPart 3wind_tunnel_db_acPart 4wind_tunnel_db_adPart 5wind_tunnel_db_aePart 6wind_tunnel_db_afPart 7wind_tunnel_db_agPart 8wind_tunnel_db_ahPart 9wind_tunnel_db_aiInfotaxis databaseBase database for running infotaxis simulations. To see how to prepare and populate this database with simulated trajectory data, see the file _paper_auxiliary_code in the GitHub repository http://github.com/rkp8000/wind_tunnel.infotaxis_db.sql Natural decision-making often involves extended decision sequences in response to variable stimuli with complex structure. As an example, many animals follow odor plumes to locate food sources or mates, but turbulence breaks up the advected odor signal into intermittent filaments and puffs. This scenario provides an opportunity to ask how animals use sparse, instantaneous, and stochastic signal encounters to generate goal-oriented behavioral sequences. Here we examined the trajectories of flying fruit flies (Drosophila melanogaster) and mosquitoes (Aedes aegypti) navigating in controlled plumes of attractive odorants. While it is known that mean odor-triggered flight responses are dominated by upwind turns, individual responses are highly variable. We asked whether deviations from mean responses depended on specific features of odor encounters, and found that odor-triggered turns were slightly but significantly modulated by two features of odor encounters. First, encounters with higher concentrations triggered stronger upwind turns. Second, encounters occurring later in a sequence triggered weaker upwind turns. To contextualize the latter history dependence theoretically, we examined trajectories simulated from three normative tracking strategies. We found that neither a purely reactive strategy nor a strategy in which the tracker learned the plume centerline over time captured the observed history dependence. In contrast, “infotaxis”, in which flight decisions maximized expected information gain about source location, exhibited a history dependence aligned in sign with the data, though much larger in magnitude. These findings suggest that while true plume tracking is dominated by a reactive odor response it might also involve a history-dependent modulation of responses consistent with the accumulation of information about a source over multi-encounter timescales. This suggests that short-term memory processes modulating decision sequences may play a role in natural plume tracking.
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visibility 17visibility views 17 download downloads 1 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5061/dryad.n0b8m&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Clinical Trial 2007 United StatesPublisher:nct Authors: Connie Weaver/Professor and Head of Department;Lifestyle choices,including diet,are conducive to healthy body weights in children. Dairy products and calcium supplementation have been associated with moderation of body weight and body fat. This study was designed to test the following hypotheses with overweight and obese adolescents consuming a controlled diet: - Dietary calcium supplementation as calcium carbonate or dairy calcium modulates energy balance in adolescents. - Increased calcium in the diet of adolescents will increase fecal fat excretion and thereby decrease fat absorption. - Calcium and dairy product supplementation will increase lipid oxidation resulting in an increase in energy expenditure. Subjects will consume a controlled diet containing 800 mg calcium for two three week periods. During one period they will also receive a frozen ice cream like product (smoothie) twice a day based on soy protein that contains no additional calcium. During the other period they will receive a similar product twice a day based on either dairy protein that contains 650 mg calcium or based on soy protein that contains 650 mg calcium as calcium carbonate
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2024Publisher:Mendeley Data Authors: Sun, Shouchen; Wang, Jiandong;Matlab program and data for the paper “An energy consumption rectification method based on Bayesian linear regression and heating degree-days". "simulation model.zip" is the heating house model in Trnsys simulation software. "Example1" and "Example2" is the Matlab program and data in this paper.
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.17632/bn8pss2g3z.2&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!
more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.17632/bn8pss2g3z.2&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2023Embargo end date: 31 Jan 2023Publisher:Edmond Opito, Emmanuel A.; Alanko, Timo; Kalbitzer, Urs; Nummelin, Matti; Omeja, Patrick; Valtonen, Anu; Chapman, Colin A.;doi: 10.17617/3.6j4za0
Data from: 30 Years Brings Changes to the Arthropod Community of Kibale National Park, Uganda by Opito, E.A., T. Alanko, U. Kalbitzer, M. Nummelin, P. Omeja, A. Valtonen, and Colin A. Chapman. 2023, Biotropica, Article DOI: 10.1111/btp.13206
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.17617/3.6j4za0&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu1 citations 1 popularity Top 10% influence Average impulse Average Powered by BIP!
more_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.17617/3.6j4za0&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.euResearch data keyboard_double_arrow_right Dataset 2023Embargo end date: 05 May 2023Publisher:Dryad Authors: Reidy, Jennifer; Sinnott, Emily; Thompson, Frank; O'Donnell, Lisa;We monitored golden-cheeked warbler territories in 10 plots within an urban preserve to determine abundance, delineate territories, and document breeding success. We determined environmental conditions across the study period to examine temporal and landscape effects. We then used these data to estimate adult survival and productivity and relate these vital rates to environmental conditions experienced during our study period. We used supported covariates to predict potential effects on this population 25 years into the future. These data and code are associated with the publication in Ecosphere entitled "Urban land cover and El Nino events negatively impact population viability of an endangered North American songbird." We performed an integrated population model to evaluate the effect of climate patterns and urban land cover on the viability of an endangered wood-warbler breeding in central Texas. We used territory monitroing data from 2011–2019 to predict viability of the population 25 years into the future. We assembled and conducted the analysis in R.
add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.All Research productsarrow_drop_down <script type="text/javascript"> <!-- document.write('<div id="oa_widget"></div>'); document.write('<script type="text/javascript" src="https://beta.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=10.5061/dryad.p2ngf1vvc&type=result"></script>'); --> </script>
For further information contact us at helpdesk@openaire.eu0 citations 0 popularity Average influence Average impulse Average Powered by BIP!
visibility 2visibility views 2 download downloads 9 Powered bymore_vert add ClaimPlease grant OpenAIRE to access and update your ORCID works.This Research product is the result of merged Research products in OpenAIRE.
You have already added works in your ORCID record related to the merged Research product.This Research product is the result of merged Research products in OpenAIRE.
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