Aquaculture is an industrial activity that not only aims to be a source of quality food, but also is a way to restock fish populations and to conserve the biodiversity of our oceans. On the other hand, the production system can influence the consumer perceptions about what is purchased and consumed, as well as the subsequent environmental and social effects. Fish feeding production is affected by the growth of aquaculture and the increasing demand that have let to deficit, high prices, and low ecological safety of fish meal and oil. In this regard, the use of microbial biomass obtained from a variety of microorganisms has been reported as a potential substitute for plant- and animal-derived ingredients, satisfying the requirements in protein and energy and even adding functional properties. In addition, microalgae can increase the nutritional value of animal feed, play a key role in the physiological growth and external appearance of aquatic animals. Finally, politicians, industry and society in general should be careful with the numerous uncertainties still present in the sector that can weaken its sustainability from environmental, social and economic perspectives.