Abstract In this work addition of ethanol to high viscosity jatropha methyl ester (JME) through port injection is investigated in order to determine its effect fuel viscosity reduction on diesel engine performance. In addition to viscosity alteration, the impact of ethanol addition on combustion characteristics such as combustion duration, ignition delay and emissions levels from diesel engines fuelled with blends of ethanol, diesel and JME is studied in particular. It is found that blending of oxygenated fuels with diesel modifies the chemical structure and physical properties which again alter the engine operating conditions, combustion parameters and emissions levels. However, the injection of only 5% ethanol through port injection allows for a total of 25% blending of biofuels into diesel yet keeping the fuel characteristics close to that of conventional diesel. However, both experimental and numerical results show that ethanol addition in JME blended diesel results in a slight increase in fuel consumption and thermal efficiency for the same power outputs as that of conventional diesel fuel. Also, the combustion characteristics with ethanol addition include improved maximum in-cylinder peak pressure, cumulative heat release (CHR) rate of heat release (ROHR), in-cylinder peak temperature and combustion duration. Regarding emission characteristics the experimental results show significant reduction in smoke, carbon monoxide (CO) and total hydrocarbon (THC) emissions with extended oxygen mass percentage in the fuel at higher engine loads. However, oxides of nitrogen (NOx) emissions are found to increase at high loads although the common tradeoff between smoke and NOx is found to be more prominent for the oxygenated fuels.