Abstract Comprehensive analytical and numerical analyses were performed, focusing on anode water loss, cathode flooding, and water equilibrium for polymer electrolyte fuel cells. General features of water transport as a function of membrane thickness and current density were presented to illustrate the net effect of back-diffusion of water from the cathode to anode over a polymer electrolyte fuel cell domain. First, two-dimensional numerical simulation were performed, showing that the difference in molar concentration of water at the channel outlet is widened as the operating current density increases with a thin membrane ( Nafion ® 111), which was verified by Dong et al. [Distributed performance of polymer electrolyte fuel cells under low-humidity conditions. J Electrochem Soc 2005; 152: A2114–22]. Then, analytical solutions were compared with computational results in predicting those characteristics of water transport phenomena. It was theoretically estimated that the high pressure operation of fuel cells expedites water condensing and results in shorter anode water loss and cathode flooding locations. In this study, it was also found that a thin membrane ( Nafion ® 111) facilitates water transport in the through-membrane direction and therefore water concentration at the anode and cathode channel outlets reaches an equilibrium state particularly at low operating current densities. Moreover, the difference in the anode water concentration between Nafion ® 111 and Nafion ® 115 membranes becomes intensified in the in-plane direction under the same water production condition, while the cathode water concentration profiles remains almost same.