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Feeding on fungi: genomic and proteomic analysis of the enzymatic machinery of bacteria decomposing fungal biomass

pmid: 32743948
SummaryDead fungal biomass is an abundant source of nutrition in both litter and soil of temperate forests largely decomposed by bacteria. Here, we have examined the utilization of dead fungal biomass by the five dominant bacteria isolated from the in situ decomposition of fungal mycelia using a multiOMIC approach. The genomes of the isolates encoded a broad suite of carbohydrate‐active enzymes, peptidases and transporters. In the extracellular proteome, only Ewingella americana expressed chitinases while the two Pseudomonas isolates attacked chitin by lytic chitin monooxygenase, deacetylation and deamination. Variovorax sp. expressed enzymes acting on the side‐chains of various glucans and the chitin backbone. Surprisingly, despite its genomic potential, Pedobacter sp. did not produce extracellular proteins to decompose fungal mycelia but presumably feeds on simple substrates. The ecological roles of the five individual strains exhibited complementary features for a fast and efficient decomposition of dead fungal biomass by the entire bacterial community.
- Czech Academy of Sciences Czech Republic
- Institute of Microbiology Czech Republic
- Institute of Microbiology Czech Republic
Proteomics, Mycelium, Fungi, Chitin, Forests, Actinobacteria, Comamonadaceae, Soil, Enterobacteriaceae, Pseudomonas, RNA, Ribosomal, 16S, Proteobacteria, Biomass, Genome, Bacterial, Pedobacter, Soil Microbiology
Proteomics, Mycelium, Fungi, Chitin, Forests, Actinobacteria, Comamonadaceae, Soil, Enterobacteriaceae, Pseudomonas, RNA, Ribosomal, 16S, Proteobacteria, Biomass, Genome, Bacterial, Pedobacter, Soil Microbiology
citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).24 popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.Top 10% influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).Average impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.Top 10%
