The article analyzed the state of the global problem of ecological safety of the EU and argued the need to create a methodology for planning technologically integrated projects of the “European Green Deal” (TIP “EGD”) that accounts for the risks to the stakeholders, i.e., the state, project executors, resource suppliers, project managers, and clients. Each of these has an individual set of values that determines the project risk for them. Herein is proposed a taxonomy of three ranks of TIP “EGD” involving agricultural waste, determined by their characteristics, products, and requirements for the stakeholders. The authors point out the need to create tools for quantitative risk assessment for the stakeholders of TIP “EGD” involving agricultural waste and distinguish four groups of risk components with regard to the value of such projects. A model of value risk formation is presented that addresses the risk management of each of these stakeholder values. The need to develop tools (models, methods, and algorithms) for quantitative risk assessment of the values of each type of project is discussed. Regularities in the formation of stakeholder values, which were a foundation of the model of formation, are established.