The long-term influence of climate change on spatio-temporal dynamics of the Polar mycobiota was analyzed on the eastern macro slope of the Polar Urals (Sob River valley and Mountain Slantsevaya) over a period of 60 years. The anthropogenic impact is minimal in the study area. Effects of environmental warming were addressed as changes in treeline and forest communities (greening of the vegetation). With warming, permafrost is beginning to thaw, and as it thaws, it decomposes. Therefore, we also included depth of soil thawing and litter decomposition in our study. Particular attention was paid to the reaction of aphyllophoroid fungal communities concerning these factors. Our results provide evidence for drastic changes in the mycobiota due to global warming. Fungal community composition followed changes of the vegetation, which was transforming from forest-tundra to northern boreal type forests during the last 60 years. Key fungal groups of the ongoing borealization and important indicator species are discussed. Increased economic activity in the area may lead to deforestation, destruction of swamps, and meadows. However, this special environment provides important services such as carbon sequestration, soil formation, protecting against flood risks, and filtering of air. In this regard, we propose to include the studied territory in the Polarnouralsky Natural Park.