Abstract. Global change, together with human activities had resulted in increasing amounts of organic material (including nutrients) received by water bodies. This input further attenuates the penetration of solar radiation leading to the view that opaque lakes are more "protected" from solar ultraviolet radiation (UVR) than clear ones. Vertical mixing, however, complicates this view as cells are exposed to fluctuating radiation regimes, which effects have in general been neglected. Even more, the combined impacts of mixing, together with those of UVR and nutrients input are virtually unknown. In this study, we carried out in situ experiments in three high mountain lakes of Spain (Lake Enol in Asturias, and lakes Las Yeguas and La Caldera in Granada) to determine the combined effects of these three variables associated to global change on photosynthetic responses of natural phytoplankton communities. The experimentation consisted in all possible combinations of the following treatments: (a) solar radiation: UVR + PAR (280–700 nm) versus PAR alone (400–700 nm); (b) nutrient addition (phosphorus (P) and nitrogen (N)): ambient versus addition (P to reach to a final concentration of 30 μg P l−1, and N to reach a N : P molar ratio of 31) and, (c) mixing: mixed (one rotation from surface to 3 m depth (speed of 1 m every 4 min, total of 10 cycles) versus static. Our findings suggest that under in situ nutrient conditions there is a synergistic effect between vertical mixing and UVR, increasing phytoplankton photosynthetic inhibition and EOC from opaque lakes as compared to algae that received constant mean irradiance within the epilimnion. The opposite occurs in clear lakes where antagonistic effects were determined, with mixing partially counteracting the negative effects of UVR. Nutrients input mimicking atmospheric pulses from Saharan dust, reversed this effect and clear lakes became more inhibited during mixing, while opaque lakes benefited from the fluctuating irradiance regime. These climate change-related nutrients input and increased mixing would not only affect photosynthesis and production of lakes, but might also further influence the microbial loop and trophic interactions via enhanced EOC under fluctuating UVR exposure.