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Understanding the folding and stability of a designed WW domain protein with replica exchange molecular dynamics simulations

Understanding the folding and stability of a designed WW domain protein with replica exchange molecular dynamics simulations
WW domain proteins are usually regarded as simple models for understanding the folding mechanism of β-sheet. CC45 is an artificial protein that is capable of folding into the same structure as WW domain. In this article, the replica exchange molecular dynamics simulations are performed to investigate the folding mechanism of CC45. The analysis of thermal stability shows that β-hairpin 1 is more stable than β-hairpin 2 during the unfolding process. Free energy analysis shows that the unfolding of this protein substantially proceeds through solvating the smaller β-hairpin 2, followed by the unfolding of β-hairpin 1. We further propose the unfolding process of CC45 and the folding mechanism of two β-hairpins. These results are similar to the previous folding studies of formin binding protein 28 (FBP28). Compared with FBP28, it is found that CC45 has more aromatic residues in N-terminal loop, and these residues contact with C-terminal loop to form the outer hydrophobic core, which increases the stability of C...
- Taiyuan University of Technology China (People's Republic of)
- South China Agricultural University China (People's Republic of)
- Chinese Academy of Sciences China (People's Republic of)
- Chongqing Academy of Science and Technology China (People's Republic of)
- Chinese Academy of Sciences China (People's Republic of)
11 Research products, page 1 of 2
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