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Digital Annex for the following thesis: Vila-Viçosa, C. (2023). Natural History, Biogeography and Evolution of the Iberian white oak syngameon (Quercus L. Sect. Quercus). Ph.D. Thesis, Faculdade de Ciências da Universidade do Porto, Portugal Abstract: The genus Quercus L. is one of the most diverse and important group of woody plants, particularly when considering that they are the trees that rule the Northern Hemisphere forests. Oaks have an intricate Biogeography that criss-crosses diverse climatic and edaphic gradients, encompassing a huge ambiguity in terms of species delimitation. Frequently, the taxonomic proposals brought by traditional Linnaean Botany are either insufficient or rather inflate the number of species and nomenclatural assignments, which are further diluted into inconsistent taxonomic ranks, varying from species to subspecies and varieties. The supremacy given to morphological characters that are inherently fragile and plastic, spread across the distribution areas of distinct lineages, may carry ambiguity on the identification and proper species delimitation. From the oaks that are distributed across the Western Palearctic region, the ones that are deciduous or brevi-deciduous present higher levels of ambiguity in terms of species number and their delimitation. This ambiguity is particularly strong in the circummediterranean region and in the transitional areas between the two major biogeographic Regions of the western Palearctic region, the Euro-Siberian and Mediterranean. This degree of uncertainty, which increases towards the Southern European Peninsulas, is amplified by the ease that the different species of oaks tend to hybridize among them. The present work provides a holistic framework that covers multiple areas, from the taxonomic and evolutive study of this genus, to biogeography and molecular characterization. Its major objective was to resolve the species delimitation of the Iberian deciduous and marcescent oaks and putative introgression among them, enhancing the available knowledge about species diversity, which can foster suitable species and forest conservation. A specific objective was to cross-reference the natural history revision and the different taxonomic treatments brought by distinct authors, with personal observations. These data were then incorporated into ecological modelling and molecular characterization, which in the end fed a newly updated taxonomic proposal. In Section A we obtained results from extensive field, herbaria, and literature review, updating the nomenclature of the Portuguese and western Mediterranean oaks. Section B was supported by Section A’s in-depth review and enabled finer species distribution models, nurturing both hindcast (since ca. 20 Kyr) and forecast (2070-2100) exercises of the range dynamics of Mediterranean oaks species. The study of past and future range shifts solved important pending biogeographic questions, especially related to past range-shifts. Such past-range shifts improved our knowledge on species responses to climate dynamics and allowed a better anticipation of future responses of range shifts driven by climate change. Section C encompassed the molecular characterization of Iberian white oak species and their hybrids, whose delimitation is often faltering when one intends to infer about species rank, or hypothesize about the participation of parent taxon in natural hybrid swarms. This work allowed us to solve the phylogenetic backbone of western Palearctic white oaks, suggesting a significant segregation of the Iberian pedunculate oaks and unveiling two subsections inside Section Quercus. These subsections are biogeographically well-segregated and present diverse levels of introgression among species. Results demonstrated the efficiency of RADSeq for rebuilding the reticulate phylogeny of the Eurasian white oaks, showcasing the significance of the Iberian Peninsula as a major hotspot for oak diversity. We implemented a circular approach to these methods, which retro-fed themselves in terms of insight generation, enabling a powerful strategy to solve the evolutionary history of this difficult groups of plants. We estimate that the reticulate historical biogeography of the western Palearctic white oaks deserves further scrutiny by adding vicariant oak populations from northern Africa, the Near East and southern European Peninsulas. Methods should again follow this similar additive and sequential process of adjoining deep Natural History examination, with extensive fieldwork in type populations and genome-wide molecular surveys, in order to solve this group of plants. With the present work, we were able to significantly improve on the depiction of the basic unit of Biodiversity (the Species), in the complex Quercus genus. We provided tools to enable further efforts for the conservation of the Mediterranean oak forests, which overwhelm one of the most important (and one of the most threatened) Biomes for plant conservation at the global scale.

Abstract High power pseudocapacitors are extremely relevant to answer specific needs in the current energy transition arena and to implement an efficient renewable energy society. However, literature shows that are still open gaps concerning improvement of their energy density at high power, conversion efficiency, cost and cycle life. Electrodes based on active transition metal compounds, and in particular metal sulphides, evidence high potential to meet these objectives. This work discusses the dependence on the synthesis route of the charge storage mechanism of manganese sulphide-based materials and relates the pseudocapacitive response of these electrodes with their polycrystalline nature. Results reveal that a manganese oxy-sulphide mixture can achieve a high specific capacitance of 231 F.g−1 at 0.5 A/g in a 0.65 V active window. These values represent a 31.5 % increase compared to pure rambergite, γ-MnS, and 436 % compared to pure hausmannite Mn3O4 prepared under the same conditions. Moreover, the results show that manganese oxy-sulphide electrodes are characterized by good charge retention (73%), and superior long term capacity retention (above 86%) after 5000 cycles, evidencing potential for high power energy storage applications.

Artículos en revistas It is shown how a standard nonlinear programming approach can be applied to solve a sophisticated version of the static optimal mix problem in generation planning. The model presented includes technical minima of thermal capacity, detailed operating models of storage-hydro and pumped-hydro units, a realistic model of capital costs for hydro plants, operating reserve and minimum demand constraints, and capacity already in existence. The model formulation is in a format that can be directly handled by the well-known MINOS code and can be efficiently solved. The use of a general-purpose nonlinear optimization program results in a great flexibility, making it possible to modify the model formulation easily or to adapt it to the characteristics of a particular electric system. A realistic application to the Spanish generation system is presented info:eu-repo/semantics/publishedVersion

Capítulos en libros This paper describes a strategic information platform developed for the German electric utility Eon, to provide historical bidding analysis and medium-term forecasting of the Iberian Electricity Market. This platform, PLAMER, has three main modules: Initialization module, consisting of different sub-modules to define the electrical system structure and to organize the input data of the rest of modules, PLAMER-bids, to read, aggregate and visualize market historical bids and also to prepare them for their future forecasted values, and PLAMER-clearing, for market clearing emulation using forecasted bids. PLAMER-clearing models the Iberian market based on a bid clearing mechanism with an inherent market splitting procedure. This market splitting is built with a bi-nodal simplification, one node representing the Spanish System and the other the Portuguese one. Both are simply connected by a unique equivalent interconnection line. The medium term clearing model uses a generation portfolio per generation company in terms of technologies, for supplying monthly demand for different load levels, and labour and non-labour periods. Some technical constraints, such as minimum outputs and pumping energy balance, are also taking into account. The mathematical problem of PLAMER-clearing is a quadratic programming model solved using GAMS language and CPLEX optimizer. Finally, a real Iberian case study is detailed and some market splitting outputs are analyzed. info:eu-repo/semantics/publishedVersion

It is now environmentally desirable and legally mandatory to add renewable fuels such as ethanol or ethyl tert-butyl ether to gasoline. However, biofuels affect, among other properties, the distillation curve of gasoline, which is subject to strict regulations. This work presents a simple mathematical model capable of accurately predicting the influence that the addition of these oxygenates has on the distillation curve. In order to address this issue, it is essential to find a simple mathematical correlation between the boiling temperatures of the hydrocarbons present in gasoline and the properties (boiling temperature and volume or molar concentration of ethanol) of the corresponding azeotropic mixtures formed with ethanol. Power functions have been assumed to model the temperature composition diagrams of the vapour-liquid equilibrium. Experimental data previously published by these and other authors have been used to fit and validate the model. The results provided by the mathematical model can be of great interest to understand the process of fuel evaporation in spark-ignition engines or the adjustment of distillation cuts in refineries, in order to comply with the regulations, in terms of the distillation curve, after adding ethanol or ethyl tert-butyl ether.

Artículos en revistas There has been total unanimity about the vital importance of reliability of supply since the beginning of the electricity sector deregulation process. This paper describes the procedure proposed by Pérez-Arriaga et al. [2005. White paper for the reform of the regulatory scheme of the power generation in Spain. For the Ministry of Industry, Tourism and Trade of Spain (in Spanish)] to improve upon the current scheme to guarantee a reasonable reserve margin, the capacity payment mechanism. This alternative design introduces improvements aimed at guaranteeing at least a minimum capacity reserve margin, as well as at providing a strong incentive for generating units to be available when needed, namely, in situations when supply is likely to be insufficient to meet the total demand. info:eu-repo/semantics/publishedVersion

Abstract From the sustainable perspective, the optimum thickness calculations of the buildings envelope insulation materials published in scientific journals suffer a number of notable shortcomings. The most relevant are the short amortization time periods and the prevalence of economic criterion. The work presented shows that an increase from 20 to 50 years in the amortization time period involves, in some cases, to double the value of the optimum thickness. Moreover, the thicknesses calculated applying energetic or environmental criteria for the optimization give, in some cases, results 10 times higher than the ones obtained using the economic argument. The type of insulation materials (especially their different characteristics at the manufacturing stage) and the calculation conditions (e.g. Degree-Days zone) also affect optimum thicknesses determination.

This paper proposes a linear programming problem to find the optimal planning and operation of aggregated distributed energy resources (DER), managed by an aggregator that participates in the day-ahead wholesale electricity market as a price-maker agent. The proposed model analyzes the impact of the size of the aggregated resources and gives the optimal planning and management of DER systems, and the corresponding energy transactions in the wholesale day-ahead market. The results suggest that when the aggregated resources are large enough, DER systems can achieve up to 32% extra economic benefits depending on the market share, compared with a business-as-usual approach (not implementing DER systems). info:eu-repo/semantics/draft