Abstract Data collected at open water stations (depth>400 m) in all major ocean basins in 2006–2008 are used to examine the relationship between the size structure of the phytoplankton community (determined by size fractionated chlorophyll filtration), temperature and inorganic nutrient availability. A significant relationship (p Laws et al., 2000 ) and integrated water column chlorophyll. Significant relationships were also found between mesozooplankton production (determined using the proxy of calanoid+cyclopoid nauplii abundance as a percentage of the total number of these copepods) and both temperature and phytoplankton size, with production being the lowest in the warmest waters where phytoplankton were the smallest. In the North Atlantic, export production and community size structure appear to be related to ocean uptake of CO2 from the atmosphere. The reported results suggest that ocean warming may directly alter plankton community structure. This, in turn, may alter the structure of marine food webs and impact the performance of the open ocean as a natural carbon sink.