Biodiversity and productivity that highly determine ecosystem services are varying largely under global change. However, the climate sensitivity of them and their relationship are not well understood, especially in the context of increasing nitrogen (N) deposition. Here, based on a six-year N manipulation experiment in an alpine meadow, we quantified interannual climate sensitivity of species richness (SR) and above-ground net primary productivity (ANPP) as well as SR-ANPP relationship as affected by six N addition rate (Nrate) gradients. We found that interannual variations in ANPP and SR were mainly driven by temperature instead of precipitation. In the plots without N addition, higher temperature substantially increased ANPP but reduced SR across years, thus resulting in a negative SR-ANPP relationship. However, the negative and positive responses of SR and ANPP to temperature increased and declined significantly with increasing Nrate, respectively, leading to a shift of the negative relationship between SR and ANPP into a positive one under high Nrate. Moreover, the adverse influence of drought on SR and ANPP would be aggravated by N fertilization, as indicated by the increased positive effect of precipitation on them under N enrichment. Our findings indicate that climate sensitivity of productivity and biodiversity may be misestimated if the impact of N deposition is not considered, and the importance of biodiversity to maintain productivity would enhance as N deposition increases. This study provides a new insight to explain variation of biodiversity-productivity relationship along with environmental changes.