Increasing climate change, through its impact on the economy, results in measures to reduce its negative effects. In agriculture, the expected positive effects may come from the implementation of practices with high carbon sequestration potential (e.g., straw incorporation). The idea of using straw as an energy feedstock requires an in-depth analysis of the impact of this practice on the organic carbon content of arable soils. Straw incorporation combined with the use of biopreparations can provide an attractive alternative to conventional fertilization and plant protection systems. This study aimed to assess the effect of straw, effective microorganisms preparation, and biostimulant on the physicochemical and biological soil parameters. The analyses included organic carbon, available P, K, and Mg, total and mineral nitrogen content, pH, bulk density, soil penetration resistance, and the number of soil-culturable heterotrophic bacteria, actinobacteria, and fungi determination. It was found that straw and EM addition resulted in the highest SOC content. Statistically lower values of bulk density and soil penetration resistance were also observed after straw incorporation. The results of our research revealed that, while the addition of straw beneficially affects soil quality, the impact of biopreparations application on soil parameters varies depending on the experimental combination used.