As a new type of agricultural management organization alliance, the effect of the benefit linkage generated by agricultural industrialization consortium on collaboration performance is closely related to the sustainable development of the agricultural economy. Based on survey data on consortia in Shanghai, this paper analyzes the effects of benefit linkage and uses multiple linear regression modeling to comprehensively explore the impact of benefit linkage effects on collaboration performance from both subjective and objective aspects, as well as the differences in impact on the collaboration performance of consortia with different organizational structures. The results show that the benefit linkage effect has a positive impact on collaboration performance, and there are differences in the impact of the benefit linkage effect on collaboration performance under different types of organizational structures, among which the resource allocation effect, capitalization effect and correlation effect of the benefit linkage of non-joint stock consortia have a positive impact on collaboration performance; the resource allocation effect of joint-stock consortia has no significant impact on collaboration performance, the capitalization effect on collaboration performance is significantly lower than that of non-joint stock consortia, and the correlation effect on collaboration performance is significantly higher than that of non-joint-stock consortia. Therefore, under a certain benefit linkage, according to the establishment purpose and collaboration goal, a consortium with different types of organizational structures should be established to give full play to the impact of the benefit linkage effect on collaboration performance and promote the sustainable development of agricultural industrialization.