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Structural dynamics of E. coli single-stranded DNA binding protein reveal DNA wrapping and unwrapping pathways

Structural dynamics of E. coli single-stranded DNA binding protein reveal DNA wrapping and unwrapping pathways
Escherichia coli single-stranded (ss)DNA binding (SSB) protein mediates genome maintenance processes by regulating access to ssDNA. This homotetrameric protein wraps ssDNA in multiple distinct binding modes that may be used selectively in different DNA processes, and whose detailed wrapping topologies remain speculative. Here, we used single-molecule force and fluorescence spectroscopy to investigate E. coli SSB binding to ssDNA. Stretching a single ssDNA-SSB complex reveals discrete states that correlate with known binding modes, the likely ssDNA conformations and diffusion dynamics in each, and the kinetic pathways by which the protein wraps ssDNA and is dissociated. The data allow us to construct an energy landscape for the ssDNA-SSB complex, revealing that unwrapping energy costs increase the more ssDNA is unraveled. Our findings provide insights into the mechanism by which proteins gain access to ssDNA bound by SSB, as demonstrated by experiments in which SSB is displaced by the E. coli recombinase RecA.
- University of Illinois at Urbana Champaign United States
- Washington State University United States
- Washington University in St. Louis United States
- Washington University in St. Louis School of Medicine United States
- University of Mary United States
DNA, Bacterial, Optical Tweezers, QH301-705.5, Protein Conformation, Science, DNA, Single-Stranded, single molecule, optical tweezer, single stranded DNA binding protein, Escherichia coli, Biology (General), energy landscape, Escherichia coli Proteins, Q, R, Biophysics and Structural Biology, DNA-Binding Proteins, Kinetics, Microscopy, Fluorescence, protein-nucleic acid interaction, Medicine, Nucleic Acid Conformation, Protein Binding
DNA, Bacterial, Optical Tweezers, QH301-705.5, Protein Conformation, Science, DNA, Single-Stranded, single molecule, optical tweezer, single stranded DNA binding protein, Escherichia coli, Biology (General), energy landscape, Escherichia coli Proteins, Q, R, Biophysics and Structural Biology, DNA-Binding Proteins, Kinetics, Microscopy, Fluorescence, protein-nucleic acid interaction, Medicine, Nucleic Acid Conformation, Protein Binding
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